rs262168696 SNP Detail

Summary

• ID
  rs262168696
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:105358569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACATTGGAAT GCCAGCAGGA AGCAAACTCT GTAGCCTCCA
  CTTTATACCG AAAGACACAA TTTATATGAC TGTCGTGGGC AACGTTTCTA TTTTGCTGCA
  Y
  ACCAGTCTCC TTCTCTACTC TGTGAGCATT AAGGAAGGCT AGAGCCGCTA ACAATCGTTT
  GCTGATTTCC TCTGTAGCAC TGAGTAATTT CGCAAAATC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323449353	CHEV_10_104959764	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262168696					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:105358569 () rs orientation: forward

Symbol	Name	Function Class
4930588G05Rik	RIKEN cDNA 4930588G05 gene	1332 bp downstream
Rr438483	regulatory region 438483	1716 bp distal
Rr438484	regulatory region 438484	within coordinates
Rr438485	regulatory region 438485	204 bp proximal
Tmtc2	transmembrane and tetratricopeptide repeat containing 2	within coordinates
Tssr99169	transcription start site region 99169	913 bp upstream
Tssr99170	transcription start site region 99170	691 bp upstream