rs262169527 SNP Detail

Summary

• ID
  rs262169527
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128511863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGGAGGA ACCTTGCACC
  AGATCTGGGA ACATACCAGC CAGCTCTCCC ACGTCCTGAA TGCAACTGAG CGTGACACCC
  AGCCATTGCA GACCGGGAGG CAGGCGGATG CCTGCCTTCT TATCCAGGCA AGGGCCAGAG
  ATATGGAGTC TCTGGAGGGA AATCAGGTCA CTGAAGGCAT CAGGAGGTAG AAAGAGAGAT
  Y
  TCCTAAGAGG AGAGTCAAAA AAAGAGAGGC TCTGCAACTG TCCCAGACCC CGGAGAGCTC
  CTGGCAGAAG TTGGGTAAGG TGCAGACTCA GTGCCAGGAC CTTGAGACCA GGAAAAGCAG
  AGAAAGCATC TGGAAGCAGA GTAGACACAG TACCACCGAG GCAGAGCCCC TCCACAGTCC
  GAGGTACAAC TTCCAAGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321305828	CHEV_4_128295314	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262169527					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128511863 () rs orientation: forward

Symbol	Name	Function Class
Tlr12	toll-like receptor 12	within coordinates
Tssr43437	transcription start site region 43437	246 bp downstream
Tssr43438	transcription start site region 43438	502 bp downstream
Tssr43439	transcription start site region 43439	539 bp downstream
Tssr43440	transcription start site region 43440	558 bp downstream