rs262175462 SNP Detail

Summary

• ID
  rs262175462
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152778515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCCGTGG GTCTCTCAGG
  CTCCTCGGAG CGGCCCCGCG GCCCCGCGGG TGCTGGCGGT CGCCGCCATC TTCCTCTCCT
  CCGACTCCTC CTCGCTTGGC GCGGGGTGGG GGGGGGGGAG AGTGAGTGAG GCGAGGGGGA
  GGGAGTTGGG GGGAGCGGCT CCGGCAGCGG CTGCGGCTCT GGCCTGTGGG GCGCAGGGAC
  K
  CTCCGGCTCC GGAGGGGGGG GGGAAAAAGA AGGGGAAAGG GGCGGGGAAA GAGGAGGGGA
  GAAGCAGAGG AAGGAAGTCG GGTTCGCTCT CGCGAGACTT CAGCAGCGCC GGTCCCTCTG
  GGTGCTTTCC GCCGCTCTGT AGCGCTCCCT CTTGGGATCG GCGAGCGGTG CGGTGCCCGC
  GCGCCGGCCG AACGATCCGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss351959048	MGP_WTSI_1_154749894	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs262175462					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351959048	MGP_WTSI_1_154749894	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152778515 () rs orientation: forward

Symbol	Name	Function Class
Cpgi860	CpG island 860	within coordinates
Cpgi861	CpG island 861	1922 bp proximal
D1Mit502	DNA Segment, Chr 1 Massachusetts Institute of Technology 502	1003 bp distal
Gm70930	predicted gene, 70930	1293 bp upstream
Rr396386	regulatory region 396386	137 bp downstream
Rr396387	regulatory region 396387	368 bp upstream
Rr396388	regulatory region 396388	1769 bp upstream
Rr420557	regulatory region 420557	153 bp distal
Rr420558	regulatory region 420558	within coordinates
Rr420559	regulatory region 420559	803 bp proximal
Rr420560	regulatory region 420560	1304 bp proximal
Smg7	SMG7 nonsense mediated mRNA decay factor	118 bp upstream
Tssr9437	transcription start site region 9437	80 bp upstream
Tssr9438	transcription start site region 9438	133 bp upstream
Tssr9439	transcription start site region 9439	1039 bp upstream
Tssr14242	transcription start site region 14242	95 bp upstream
Tssr14243	transcription start site region 14243	14 bp upstream
Tssr14244	transcription start site region 14244	within coordinates
Tssr14245	transcription start site region 14245	299 bp downstream
Tssr14246	transcription start site region 14246	324 bp downstream