rs262177427 SNP Detail

Summary

• ID
  rs262177427
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:38412196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGTGGTTT ATTTTCCTTG
  ATTGAAGGGG ATTTAAGAGA AATTAAACAT TTTCAGAAAC TAATGATTCC ACGTTAGGAA
  TGAAAAAGTG GATTCGTAAT GTGGTTGCAC TTGTGTTGGT AAATATTGTT AGCTTTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTTGAG TTTGTGCACA TTGTCTTTGA ATGGAAAGGT
  Y
  TCTTGTCTTA CCCGGTGGCT GCCCAGTCAT ATTATTTGAG TGGCTCTCAT TAGTTCGAAT
  TGGGAGCATT TTGTCCGTTG TGGATTTCTG GAGAATGACG GAAAAAAAAA AAAAAAAAAA
  AAACATTCGC TTTGGATCAA AAAAAAAAAA ACTTAGGAAA ATACATCGGT ATGCTTTTGA
  GGGAACCGGT GAACAATGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368008566	MGP_WTSI_6_38385261	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262177427					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368008566	MGP_WTSI_6_38385261	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38412196 () rs orientation: forward

Symbol	Name	Function Class
1700021L22Rik	RIKEN cDNA 1700021L22 gene	961 bp upstream
Cpgi17310	CpG island 17310	185 bp distal
Rr368055	regulatory region 368055	1306 bp downstream
Rr628818	regulatory region 628818	1593 bp distal
Rr628819	regulatory region 628819	1078 bp distal
Tssr55646	transcription start site region 55646	1398 bp downstream
Tssr55647	transcription start site region 55647	1379 bp downstream
Tssr55648	transcription start site region 55648	1296 bp downstream
Tssr55649	transcription start site region 55649	879 bp downstream
Tssr60412	transcription start site region 60412	1600 bp upstream
Tssr60413	transcription start site region 60413	1529 bp upstream
Ubn2	ubinuclein 2	within coordinates