rs262180056 SNP Detail

Summary

• ID
  rs262180056
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100574130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCACACG CGTTTGCCAC
  TTCCCCCTCC TTCTCTTCTT TTCTCTCCCA TCTCGCTCTT TCTTTAGACA GGGCCTTGAG
  GGGCCTGGAG AGTTGATCCA GTAGTTAAGG TCTTGCAGAG AATCCAGGTT CTGTTCCCAG
  CACCCACATG GCGGGTTCCA ACTGTCTTAA TTCTGGGTCA AGGGGATCTA TGCCCTTCTC
  Y
  GGCCTCTGCT GGTGCCAGGC ACACCCACAA TGCCACATTT ACTTTTAATT AAAAAAATTT
  TTTGAGGCAT GAACCTCCAT ACCTGGCTAA TTTAATTTTT AATTTTTAAT TTGGTGTATG
  TGCCTGAAGA GGCCAAAGAA AGTCTGATCC TCTGGGTCTG GAGTTACAGG AGCTGGTAGC
  TTGTAAGCAG CCTGATGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395181574	MGP_WTSI_15_100506680	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262180056					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395181574	MGP_WTSI_15_100506680	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100574130 () rs orientation: forward

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Rr509795	regulatory region 509795	1835 bp distal
Rr509796	regulatory region 509796	693 bp proximal
Tssr4720	transcription start site region 4720	1782 bp upstream
Tssr4721	transcription start site region 4721	675 bp upstream
Tssr133153	transcription start site region 133153	1818 bp downstream
Tssr133154	transcription start site region 133154	1616 bp downstream
Tssr136461	transcription start site region 136461	1753 bp upstream
Tssr136462	transcription start site region 136462	1661 bp upstream
Tssr136463	transcription start site region 136463	1631 bp upstream
Tssr136464	transcription start site region 136464	1590 bp upstream
Tssr136465	transcription start site region 136465	1567 bp upstream
Tssr136466	transcription start site region 136466	1532 bp upstream
Tssr136467	transcription start site region 136467	1529 bp upstream
Tssr136468	transcription start site region 136468	887 bp upstream
Tssr136469	transcription start site region 136469	847 bp upstream
Tssr136470	transcription start site region 136470	835 bp upstream
Tssr136471	transcription start site region 136471	813 bp upstream
Tssr136472	transcription start site region 136472	802 bp upstream
Tssr136473	transcription start site region 136473	1835 bp downstream
Tssr136474	transcription start site region 136474	1865 bp downstream
Tssr136475	transcription start site region 136475	1924 bp downstream