rs262183020 SNP Detail

Summary

• ID
  rs262183020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:119394195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTCTCTT GTTTTTATAC
  AATATTTATG AAGAAGTAAA AATGAATGGT CATTTTGATG GGGAATTTAT CCTGGGGAAA
  TGATTAGATG GAGGAATGAT ACCAGTAATA AGAATGTTTG CCCTAGTATT TGTATTTTTA
  AATGTTTCAT CGAAAAGAGA ATTTTAAATA TAAAATTTTC ATTACATATT TAAAAATGCA
  Y
  TTAGCCTGAA CCATTTTCTC ATGTTAAAGT TGTGGTTATA TAACTGACTG ATAGGGAAAA
  ATATAGATTA GGGTGGGGAT GGTTAGAAAG CAGATGGATG TTTGTAAAGT CCCCTGGGTT
  GGAAACGGTA GTCCAGAGAT TAAAAAGCTT GATCTTCGGA GGCTGCATTC CCGCTGTGGC
  TTTTAAACCT CTTTCTTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372922784	MGP_WTSI_7_126938486	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262183020					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372922784	MGP_WTSI_7_126938486	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:119394195 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19637	CpG island 19637			362 bp distal
Eri2	exoribonuclease 2			912 bp upstream
Rexo5	RNA exonuclease 5			Intron
				Noncoding-Transcript-Variant
Rr654660	regulatory region 654660			1016 bp distal
Rr654661	regulatory region 654661			952 bp distal
Rr654662	regulatory region 654662			832 bp distal
Rr654663	regulatory region 654663			299 bp proximal
Tssr68757	transcription start site region 68757			1220 bp downstream
Tssr68758	transcription start site region 68758			960 bp downstream
Tssr68759	transcription start site region 68759			927 bp downstream
Tssr68760	transcription start site region 68760			815 bp downstream
Tssr68761	transcription start site region 68761			678 bp downstream
Tssr74500	transcription start site region 74500			1016 bp upstream
Tssr74501	transcription start site region 74501			980 bp upstream