rs262185774 SNP Detail

Summary

• ID
  rs262185774
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23735797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTTCCCC TCTTTCCCAT
  CCACTATTCC TTCCTTCTTC AGAAAAAAAG GAGCCCTACA CCCCCTTCCC CCAGATATCT
  ACATGCTTTG GCATACCATG TTGCTCAATA ACTAGGCACA GATTGGTGTT CTCTTTCAGA
  GGTCATGAAA GGCAGCCCAG AAGGGATAAA GTATCCCAGA GAAAGCAATA GAGTAAGAAA
  Y
  AGTACCTGGT ATTGCTCTTA GGAGTCCCAC ATAAAGACCA GGTAAATGTG TAAATGTACC
  ATATTCTCTG TATCCATTCC TCTCTTGAGG GATATCTGGG TTCTTTCCAG CTTCTGACTA
  CTAAAAATAA GGCTGCTATG AACAAAATGG AGCATGTTTC CTTATTACCA GTTGGAGCAT
  CTTCTGGGTA TATGCCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57L/J	C58/J	CAST/EiJ	I/LnJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	ST/bJ
ss397836710	MGP_WTSI_17_23653790	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	C	T	C	T	C	T	T	C	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57L/J	C58/J	CAST/EiJ	I/LnJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	ST/bJ
rs262185774					SNP	T	T	T	T	T	T	T	C	T	C	T	C	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397836710	MGP_WTSI_17_23653790	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23735797 () rs orientation: forward

Symbol	Name	Function Class
Gm7898	predicted gene 7898	1039 bp downstream