rs262187121 SNP Detail

Summary

• ID
  rs262187121
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:84338289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCCGAGA CAGGGTTTCT
  CTGTGTAGCC CTGGCTGTCC TGGAACTCAC TGTGTAGAAC AGGCTGGAAT CCGCCTGCCT
  CTGCCTCCCA AGTGCTGGGA TTAAAGGCGT GCGCCACCAC GCCCGGCTTA CGTGTTTTTT
  AAATGTTAAA AAAAAAAAAA AAAAAAGGAA AAAGGAAAAA TTAAGACAAT GTCTTTTCTC
  Y
  ATTTAAATGT TCATGGTTTA CCAAAAAATT GTCCCCGCAG GCCTGGAAAT AATACATAAA
  ACAGCAATTG CCATAAAATA CTTCATAAAT AATCTCAAAA GCCTACGTGG CATTTTAATT
  AGGAAAAGGA TAAATTTCGA ATATAGTTTG AAAGTGACGT TTAATTTCGG TTTTCGGAAC
  CACTAGGTGC TGACTACCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372145351	MGP_WTSI_7_91837591	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262187121					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372145351	MGP_WTSI_7_91837591	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:84338289 () rs orientation: forward

Symbol	Name	Function Class
2610206C17Rik	RIKEN cDNA 2610206C17 gene	559 bp upstream
Cpgi19383	CpG island 19383	225 bp proximal
Rr400423	regulatory region 400423	733 bp upstream
Rr650631	regulatory region 650631	48 bp distal
Rr650632	regulatory region 650632	131 bp proximal
Rr650633	regulatory region 650633	674 bp proximal
Rr650634	regulatory region 650634	866 bp proximal
Tssr73444	transcription start site region 73444	713 bp downstream
Tssr73445	transcription start site region 73445	742 bp downstream
Tssr73446	transcription start site region 73446	764 bp downstream
Tssr73447	transcription start site region 73447	823 bp downstream
Tssr73448	transcription start site region 73448	853 bp downstream
Tssr73449	transcription start site region 73449	867 bp downstream
Tssr73450	transcription start site region 73450	899 bp downstream
Zfand6	zinc finger, AN1-type domain 6	Intron