rs262191948 SNP Detail

Summary

• ID
  rs262191948
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:96183000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGGAAGG ACGCTCCGAC
  GTCCACCTAG AGACATCAAC AACGTACAGT AGTCCCAGGT TGGGCTCCGA CGACTTTAAA
  AGTCAGGGCT CGTGCCGCCT CCGTCCCCAC GGCGCCCGCG GCTGCAGGGC CCGTCCGCCG
  GGTCGCCTTG GGCCGCCACC GCGGGCATCG CCGATTCCGC CGCGGTCCTG GAGCCGGAAG
  S
  CCCTCCGCGG TCCCCGCGGG CGAGCGCGCA CGACGACGGC GGCGGGCCCT CCCGGTCCTC
  GTCCCTCCGG ATCCGGGGCC CGCGGTCACC CCGCCGCGAG TCCAGTCCAG CCCACCCCGC
  CTCTGCCTTC AGCTACCCTT CCCGTGGCGC GCGGCCTCGC TCGGAGAAGA CGGAAGAGGA
  CAGGGCGCGC CGGGCCAGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss395085928	MGP_WTSI_15_96115550	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs262191948					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395085928	MGP_WTSI_15_96115550	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:96183000 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7599	CpG island 7599	within coordinates
Cpgi7600	CpG island 7600	1170 bp proximal
Gm38469	predicted gene, 38469	within coordinates
Gm62599	predicted gene, 62599	45 bp downstream
Rr369997	regulatory region 369997	746 bp downstream
Rr391146	regulatory region 391146	within coordinates
Rr508521	regulatory region 508521	1545 bp distal
Rr508522	regulatory region 508522	1021 bp distal
Rr508523	regulatory region 508523	134 bp distal
Rr508524	regulatory region 508524	458 bp proximal
Rr508525	regulatory region 508525	576 bp proximal
Rr508526	regulatory region 508526	1566 bp proximal
Rr508527	regulatory region 508527	1815 bp proximal
Rr508528	regulatory region 508528	1909 bp proximal
Tssr132814	transcription start site region 132814	886 bp upstream
Tssr132815	transcription start site region 132815	1637 bp upstream
Tssr132816	transcription start site region 132816	1670 bp upstream
Tssr132817	transcription start site region 132817	1741 bp upstream
Tssr132818	transcription start site region 132818	1811 bp upstream
Tssr136021	transcription start site region 136021	372 bp downstream
Tssr136022	transcription start site region 136022	590 bp downstream
Tssr136023	transcription start site region 136023	766 bp downstream