rs262192549 SNP Detail

Summary

• ID
  rs262192549
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30818106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGCAGAG AGCACCTGGT
  CACAGGTAGC AGTGGGTACC TATGGCAGCA CCCAGTGCTC CTCTGAAGCC CTGATGGGAA
  GGTAGGCGGG ATGGGCCCAA ATAGACCACG AGGAACTAGA GCTGTGAGCA GCTGGTACAG
  AGACACGGCT CAGCGGGAAA GAGCACTGCC TTGCTTGCAG AGGACCTAAG TTCAGTTCCC
  W
  GAGCCCACAT GATGACTCAA ACATCCCCTA ACTCCAGTCC CAGGGAAATC TGACACCCTC
  TTCTGGTCTC TGTGGGCACT TTATACATGA TGTGCACGTT CAGACAAGTA CGCACACACA
  CACACACACA CACACACACA CACACACACA CACACACACA CACACAAATA AAAATAAATT
  TTAAATGGAA AGACATGAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353526753	MGP_WTSI_2_30783614	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262192549					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353526753	MGP_WTSI_2_30783614	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30818106 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11459	CpG island 11459	1553 bp proximal
Gm57831	predicted gene, 57831	within coordinates
Rr42639	regulatory region 42639	within coordinates
Rr56594	regulatory region 56594	494 bp proximal
Rr56595	regulatory region 56595	894 bp proximal
Rr372993	regulatory region 372993	22 bp downstream
Tssr17153	transcription start site region 17153	423 bp downstream
Tssr17154	transcription start site region 17154	1035 bp upstream
Tssr17155	transcription start site region 17155	1925 bp upstream
Tssr23406	transcription start site region 23406	33 bp upstream
Tssr23407	transcription start site region 23407	858 bp downstream
Tssr23408	transcription start site region 23408	1736 bp downstream
Tssr23409	transcription start site region 23409	1800 bp downstream
Tssr23410	transcription start site region 23410	1996 bp downstream