rs262192580 SNP Detail

Summary

• ID
  rs262192580
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:84567265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTATGATT TGGTAAAATT
  TGAAATTTGA TGTTTGCTTT CACTGAAATA TCTCATGCTT CTCTGATTTT GATGCCTGAT
  ATTCCTTTCC GTAGAAGTTT CCTCTACTCA CACATTAGAT TTCCTCACTC TACAGTGCAT
  TGCTCCACAG CTAGTACTGA TGCTCAGATA TTCAGGCCTA AGGTTTTTCT GACAAGATAC
  Y
  GGGGGGTGGT GGGGGGGTGG TGGGGGGGGG TTGTTTCTTG AAGGATCCAC AGCTTGGAGT
  TTCTATCAAA CAATACAATA TCAACATTTT CCAAATGTAA AACTAAAGAT ATTTGTCTAA
  GTACATACAC AGATTATAAT ACATAACATA TACATTTATA TATGTAATAA CGAAACAAAT
  ATAGTCTAAA CCAAGCATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	JF1/MsJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
ss365712115	MGP_WTSI_5_84848431	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	JF1/MsJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
rs262192580					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365712115	MGP_WTSI_5_84848431	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:84567265 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16023	CpG island 16023	1567 bp distal
Gm42163	predicted gene, 42163	Intron
Gm71976	predicted gene, 71976	within coordinates
Rr613967	regulatory region 613967	1940 bp distal
Rr613968	regulatory region 613968	1936 bp distal
Rr613969	regulatory region 613969	1091 bp distal
Tssr51513	transcription start site region 51513	1917 bp upstream