rs262198426 SNP Detail

Summary

• ID
  rs262198426
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:162504691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCC CAACTGTTTG ATCCAGCCCA
  Y
  GTCTATCCAG GCCTAGCCTT AAGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320601356	CHEV_2_162488507	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262198426					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162504691 () rs orientation: forward

Symbol	Name	Function Class
9430021M05Rik	RIKEN cDNA 9430021M05 gene	within coordinates
Cpgi12617	CpG island 12617	1078 bp distal
Ptprt	protein tyrosine phosphatase receptor type T	1624 bp upstream
Rr569218	regulatory region 569218	1688 bp distal
Rr569221	regulatory region 569221	1489 bp distal
Rr569222	regulatory region 569222	within coordinates
Rr569223	regulatory region 569223	500 bp proximal
Tssr21417	transcription start site region 21417	1532 bp downstream
Tssr21418	transcription start site region 21418	1511 bp downstream
Tssr21419	transcription start site region 21419	1451 bp downstream
Tssr27272	transcription start site region 27272	1713 bp upstream
Tssr27273	transcription start site region 27273	1681 bp upstream