rs262198694 SNP Detail

Summary

• ID
  rs262198694
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:44885079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACTTCCA ACATTTTAAA
  TTTATCTTTT CCTTTTTTCT TCTTCAAGAT GTAACTACAG ATCAGATACT AAGGACCTTC
  ACGTTTCGCT GATGTAGTTT TTGGAAGAAA AAGGGGGGGA GTGAAGGGCG TCGGTTTTTT
  TTTTTTTCTT CTTTTTTTTT CTTTTCTTTT TTTGTGTCTG TTGTATGTTT CGGGGGAAAT
  W
  TTCCATTATG AGTGTTTTAC TAAAGTGAAT TTTTCTTGTT TGCTTCGCTC GTCTTTGGCT
  CTTTTTATAT TTTTTCTTTT ATCCTTCTCA ATTTCGGATT TATTTCAAGG CGAATCTGGT
  TTTGGGGGAA GAGGAAGAAA AGTCGGATTA CAAGATCAAC CACCACCAAC AACAATAAAA
  ACCACCAGGA TATTTTTTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388465236	MGP_WTSI_13_44826972	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262198694					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388465236	MGP_WTSI_13_44826972	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:44885079 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi5525	CpG island 5525			177 bp distal
Cpgi5526	CpG island 5526			1607 bp proximal
Gm60383	predicted gene, 60383			1502 bp upstream
Jarid2	jumonji and AT-rich interaction domain containing 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr369688	regulatory region 369688			887 bp downstream
Rr403743	regulatory region 403743			215 bp downstream
Rr403744	regulatory region 403744			1197 bp upstream
Rr478586	regulatory region 478586			1513 bp distal
Rr478587	regulatory region 478587			322 bp distal
Rr478588	regulatory region 478588			383 bp distal
Rr478589	regulatory region 478589			1974 bp proximal
Tssr119536	transcription start site region 119536			1989 bp downstream
Tssr119537	transcription start site region 119537			1906 bp downstream
Tssr119538	transcription start site region 119538			1796 bp downstream
Tssr119539	transcription start site region 119539			1005 bp downstream
Tssr119540	transcription start site region 119540			787 bp downstream
Tssr119541	transcription start site region 119541			696 bp downstream
Tssr119542	transcription start site region 119542			567 bp downstream
Tssr119543	transcription start site region 119543			327 bp downstream
Tssr119544	transcription start site region 119544			311 bp downstream
Tssr119545	transcription start site region 119545			262 bp downstream
Tssr119546	transcription start site region 119546			230 bp downstream
Tssr119547	transcription start site region 119547			20 bp downstream
Tssr119548	transcription start site region 119548			121 bp upstream
Tssr119549	transcription start site region 119549			239 bp upstream