rs262207525 SNP Detail

Summary

• ID
  rs262207525
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107429833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTCAGAC TTGTTGACTC
  CGTTGTTGAA AGTGGACCTT AGGCATCCTG GTTTTTCTGT TTTGGTTTGG TTTTTTGGTT
  GTTTTGTTGT GTTTTAAGAC AGGGTTTCAC TCTGCAGCCC TGGCTTGCCT AGAACTCTCT
  ATGCAGACCA GGCTGTGACA AGCAACCCAC CTGCCCCTGC CTCCCAAGTT CTGATGTATA
  R
  TTTTGAGTTG AGAATCGGTG CTTTGGGCCA TATAGGAACT TAAAAATGGC ACTGTAGGCC
  TGTGTGTGCC TCCAGATCAT CTCATTCACT ATACAAGTAT GTCACAAACT CAGCTAGTGT
  AGCAGTTTGT GACAGAATGC CACATGAGAG CAAGAGCTGC GGCATCTCAG CATTCACAAG
  GAGAAAGAAA GCTGCTCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378850634	MGP_WTSI_9_107454965	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262207525					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378850634	MGP_WTSI_9_107454965	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107429833 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22292	CpG island 22292	584 bp distal
Cpgi22293	CpG island 22293	1244 bp proximal
Gm34106	predicted gene, 34106	1797 bp upstream
Gm68605	predicted gene, 68605	876 bp downstream
Rassf1	Ras association (RalGDS/AF-6) domain family member 1	within coordinates
Rr368855	regulatory region 368855	1381 bp downstream
Rr401662	regulatory region 401662	1936 bp upstream
Tssr86984	transcription start site region 86984	1836 bp downstream
Tssr86985	transcription start site region 86985	1194 bp downstream
Tssr86986	transcription start site region 86986	1059 bp downstream
Tssr86987	transcription start site region 86987	1943 bp upstream
Tssr86988	transcription start site region 86988	1972 bp upstream
Tssr86989	transcription start site region 86989	1999 bp upstream
Tssr91394	transcription start site region 91394	1797 bp upstream
Tssr91395	transcription start site region 91395	1759 bp downstream
Zmynd10	zinc finger, MYND domain containing 10	1315 bp downstream