rs262213067 SNP Detail

Summary

• ID
  rs262213067
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89960443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATATGGAA ATGTTCGGAG
  AGCTCCAGGG AACCTAGGTT CCCTGGCTTC GGCAGAGCCT GGGCTAACGC GCGAGCGCGG
  CGGGACTGTC CTAGCAGGTG TTCCCGGAGA GAGAGGCGAT GGCGTCTAGT AGTAACTGGC
  TTTCTGGAGT GAATGTCGTG CTGGTGATGG CGTACGGGAG CCTGGTGAGA TCCCCATTCT
  Y
  TTCCTCTTGT GGCATTTGTC TGAGTCCCGA CCCTCTGAGC CGGACTCCTG AAAAGAAGGC
  TCCTGAGCCG TTCTGTCTTT GTTCTTCAGC CACTTAACTT GTTTTGTTTC TGGACTTCCG
  AATTGTATCC GTAGACAGTC TGAGATCTTT AAGTCAAAGC TGCCTGGCTC TAAGTAAGAA
  CCCTCCCTCT TAAATTCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358825081	MGP_WTSI_3_89857058	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262213067					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358825081	MGP_WTSI_3_89857058	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89960443 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4933434E20Rik	RIKEN cDNA 4933434E20 gene			Intron
				Noncoding-Transcript-Variant
Cpgi13449	CpG island 13449			within coordinates
Gm53012	predicted gene, 53012			Intron
Rr375341	regulatory region 375341			within coordinates
Rr580266	regulatory region 580266			1728 bp distal
Rr580267	regulatory region 580267			1490 bp distal
Rr580268	regulatory region 580268			695 bp distal
Rr580269	regulatory region 580269			1238 bp distal
Rr580270	regulatory region 580270			255 bp distal
Tssr30147	transcription start site region 30147			1571 bp downstream
Tssr30148	transcription start site region 30148			1500 bp downstream
Tssr30149	transcription start site region 30149			279 bp downstream
Tssr30150	transcription start site region 30150			200 bp downstream
Tssr34189	transcription start site region 34189			677 bp upstream
Tssr34190	transcription start site region 34190			615 bp upstream
Tssr34191	transcription start site region 34191			509 bp upstream
Ubap2l	ubiquitin-associated protein 2-like			508 bp upstream