rs262215331 SNP Detail

Summary

• ID
  rs262215331
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99507146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCATCTCT TAAGCCCTAG
  CCATCTGTTC CACACAGAGG AGTAATAGAG CATTTCGATT AAAATGTTTC AAGAAAAGTG
  GTTTACTATA TGAAAGCACC ATGCTTCACC CTCATCACAT CAGCTGGGAA GGACAACCCT
  GGAAGGGGGC CAGAAGGTAT GCTGGACTAA ACCCCTCATT CTACAGAATA AGGAAGGCAA
  W
  AAGGAGAACA GGCACATTTT AGGACACAGA GCTAGAGGCA AAACTAATGC CAGGCCCGTT
  TTTCAGGCAA CTGTCTCTTG CAAGTTGCTG TGCAAGGGGC AAGATGGTCA ATCCAGGAGC
  AGCGTTCCTC CCCTGACTCT TTCCTTTAAG CCCTTATGGA CAAGGACGTG AAATTCTTTA
  GAAATTGTGT AGGCAGAGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322347449	CHEV_7_107006449	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262215331					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99507146 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19472	CpG island 19472	569 bp proximal
Rr400465	regulatory region 400465	889 bp upstream
Rr652012	regulatory region 652012	950 bp proximal
Spcs2	signal peptidase complex subunit 2 homolog (S. cerevisiae)	within coordinates
Tssr68077	transcription start site region 68077	1120 bp upstream
Tssr68078	transcription start site region 68078	1184 bp upstream
Tssr73711	transcription start site region 73711	361 bp downstream
Tssr73712	transcription start site region 73712	933 bp downstream
Tssr73713	transcription start site region 73713	971 bp downstream
Tssr73714	transcription start site region 73714	1053 bp downstream
Xrra1	X-ray radiation resistance associated 1	1279 bp upstream