rs262215816 SNP Detail

Summary

• ID
  rs262215816
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177151571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTTCATT TATTTATTTT
  TTTGTTTGTT TGGGTTTTTT TGTTTTTTGT TTTTGTTTGT TTGTTTGTTT GTTTGTTTGT
  TTTTTCGAGA CAGGGTTTCT CTGTATAGCC CTGGCTGTCC TGGAACTCAC TCTGTAGACC
  AGGCTGGCCT CGAACTCAGA AATCTGCCTG CCTCTGCCTC CCGAGTGCTG GGATTAAAGG
  Y
  GTGCGCCACC ACGCCCGGCT TATACATTTA TTATTTAACT CTACAACCAT TTAAAAGTGG
  TTAAAAGAGT CTGAGACTCA TGTTAGGATT AGGAAAGTAA TGTGAGGTTC TGCTTGTGGC
  CTGGAGGAGA TGGGTGGGGT CAAGACAGAA TAGTGCTTAG GGAAAGTCGA GGAAGGGGGT
  GGGGTGGGGG TGGGCTTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320158858	CHEV_1_179254136	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262215816					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177151571 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1079	CpG island 1079	759 bp distal
Gm36904	predicted gene, 36904	within coordinates
Rr423981	regulatory region 423981	1254 bp distal
Rr423982	regulatory region 423982	641 bp distal