rs262219559 SNP Detail

Summary

• ID
  rs262219559
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137743998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAAATCAC AGCCAGTGGG
  TCACATTGAC TATGTATTTA TGGACAGTCA GGTACCCAGA ACATGTCTGG CACGTTCCTT
  GAGACTCTTT TGGAGAACCT GCAAAAGCCT ACAAGTAAGG GAATCCCTGG CCTCCCGCAG
  GCTCCTCCTC TTTTTCTCCG CCCTCATGCC CCTCCCTCCG AGGAAGAGTT GCCTGGAACC
  Y
  GGCAGGTGTA GGGTTAAAGC AACCAGTTTG GGACCCGCAG CGGCAGAAGC TGCAGCAGCA
  ACAGCAGCAG CTACAGCAGC AACTGTAGGC TGCGGCTGCG GCTGCGGCTG TGGCAGGCCT
  GGCTCCGGGC CAGCTGGCAG GGAGCCTTAG GAGGGAGGAG GGAGGAGGGA GGAGGAAGAG
  GGGAAGGAGG AGGAGAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366884375	MGP_WTSI_5_138186964	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262219559					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366884375	MGP_WTSI_5_138186964	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137743998 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16849	CpG island 16849	271 bp proximal
Gm57848	predicted gene, 57848	276 bp upstream
Gm68923	predicted gene, 68923	1248 bp upstream
Rr622970	regulatory region 622970	1204 bp distal
Rr622971	regulatory region 622971	within coordinates
Rr622972	regulatory region 622972	758 bp proximal
Rr622973	regulatory region 622973	1563 bp proximal
Rr622974	regulatory region 622974	1836 bp proximal
Tsc22d4	Tsc22 domain family, member 4	276 bp upstream
Tssr49366	transcription start site region 49366	15 bp upstream
Tssr49367	transcription start site region 49367	217 bp upstream
Tssr49368	transcription start site region 49368	231 bp upstream
Tssr49369	transcription start site region 49369	377 bp upstream
Tssr49370	transcription start site region 49370	447 bp upstream
Tssr49371	transcription start site region 49371	502 bp upstream
Tssr49372	transcription start site region 49372	619 bp upstream
Tssr49373	transcription start site region 49373	811 bp upstream
Tssr49374	transcription start site region 49374	903 bp upstream
Tssr49375	transcription start site region 49375	954 bp upstream
Tssr49376	transcription start site region 49376	1149 bp upstream
Tssr49377	transcription start site region 49377	1216 bp upstream
Tssr49378	transcription start site region 49378	1330 bp upstream
Tssr49379	transcription start site region 49379	1775 bp upstream
Tssr49380	transcription start site region 49380	1872 bp upstream
Tssr49381	transcription start site region 49381	1907 bp upstream
Tssr49382	transcription start site region 49382	1978 bp upstream