rs262223463 SNP Detail

Summary

• ID
  rs262223463
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92424140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTTCCTT GACACGGTGA
  TGGCGAAGTT CAGAAGGAAC AGCTGGGAGT GTGACAAGCG CCTACTCAGC CAAGCAGACT
  GAAGCCCTCG CAGTCACCAC TCACCTCCGG GAGCGCCGGG TTCAGTAGAG AAAGAAGGTC
  TAGCCAGGGC GTGCCGAGGA AGCTTCTGGA ACCCCGGGAG AGCAGAGGGG CGCACGTTCC
  R
  CAAGCAAGCT CCCTGGAGCC CCGGCGTGAG GCGGTGCACG TAGGCGTAGG CGACTCGGAG
  GGTGGGGGTG CAGCCGGGAT AGCCCGGGAC GCGGGGTCCC GGAGCAGCGC CCCGCCCCCG
  GCCCTGGCCC CGCCCTCCTT GGCTGCTCTT AAGCCCGCGC CGCGGGCGCC TCCGGTTCCG
  TCGTCCGCTC CTTGCGCTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323074157	CHEV_9_92436925	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262223463					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92424140 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	within coordinates
Cpgi22147	CpG island 22147	within coordinates
Plod2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	136 bp upstream
Tssr86520	transcription start site region 86520	168 bp upstream
Tssr86521	transcription start site region 86521	343 bp upstream