rs262226891 SNP Detail

Summary

• ID
  rs262226891
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142948704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATTTGCT TACTGTTACA
  CAGTAAGTCA GCACCATGCT GAACTGGGTG TACTTGATGC CAGAATGTTC TCTCATTATA
  CACACACACA CACACACACA CACACACACA CACACACACC AATGAACCAT GGCCTCTCTT
  GTTTCACAGT GCTGGGCGAG GGGGTCAGAG TTCCCACCTG TTTAGCAAAC ATTGAGATAC
  R
  AGCTGCGGTA AACGTCTCTT GGGAATGTGA CTGGTATGTA AAGCAGAAGA TTGGGGGTAC
  AGGATCGGGG TAGTAGATTA TAAAGATCTG GGGTCCCTTC TGAGGACCCA GGAGCTGCCC
  CAGGAGAGTG AATAGAAATG AGCATGCACC AAGTTTATGG ACTGGTTTTG CAGGCAGGGG
  CCTCAGCAAA GGCCCGGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367003310	MGP_WTSI_5_143724628	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262226891					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367003310	MGP_WTSI_5_143724628	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142948704 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16967	CpG island 16967	1425 bp distal
Cpgi16968	CpG island 16968	435 bp distal
Fscn1	fascin actin-bundling protein 1	within coordinates
Gm72694	predicted gene, 72694	4 bp downstream
Rr378736	regulatory region 378736	within coordinates
Rr624075	regulatory region 624075	1104 bp distal
Rr624076	regulatory region 624076	1488 bp proximal
Tssr49615	transcription start site region 49615	1959 bp downstream
Tssr49616	transcription start site region 49616	1929 bp downstream
Tssr49617	transcription start site region 49617	1749 bp downstream
Tssr49618	transcription start site region 49618	729 bp upstream