rs262231884 SNP Detail

Summary

• ID
  rs262231884
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45828304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAAGGCGT TGAGAGAAAA
  ATGAGATAAT TTTGCACTGT TCAGATTTAT GCTTTGTGTT TTCTCAGAGG TACAAATTAT
  ATACTGAAGA GAAGTTTGTG CGGATATATT TTCCCTTCCT TGATTTGGAT AATTGATAGT
  TTATTAAGAA ACCTTAGAGT TTAACCTAAG GGTAACACTT TCAGCAGTAT TATGGCAGTG
  Y
  TGGGAATAAA GAATTTTTAT TAATGCAGCT TCTGGAGGCG TTTCTTCTCT CTTTCAGATG
  GATGATAAAA CAGCTTTTCA GGAGGAGTTT ATTCATTACC TTAAGTATGC TATGGTGGTA
  TATAAGCGTG AACCTGCCGT GGAGAGGGTC ATGGACTTCA CAGCCAAGTT TGTTACTTCA
  TTTCACCAGT CTGATGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	PWK/PhJ	QSi3/Ianm	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364768233	MGP_WTSI_5_46062201	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	PWK/PhJ	QSi3/Ianm	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262231884					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364768233	MGP_WTSI_5_46062201	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45828304 () rs orientation: forward

Symbol	Name	Function Class
1600023N17Rik	RIKEN cDNA 1600023N17 gene	1254 bp upstream
Cpgi15841	CpG island 15841	466 bp distal
Ncapg	non-SMC condensin I complex, subunit G	within coordinates
Rr367838	regulatory region 367838	1079 bp downstream
Rr611096	regulatory region 611096	1033 bp distal
Rr611097	regulatory region 611097	1271 bp distal
Tssr46141	transcription start site region 46141	1061 bp downstream
Tssr46142	transcription start site region 46142	1017 bp downstream
Tssr46143	transcription start site region 46143	956 bp downstream
Tssr46144	transcription start site region 46144	718 bp downstream