rs262232660 SNP Detail

Summary

• ID
  rs262232660
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:71880649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTATACC TCAAGATCTC
  CATGCCAAGA TCCAGGTCAG AAACTTGTCT CTTCCTGCCT CAACATCCAG ATCACAGGTG
  AGCTCTCCAA TTCTGGATTG TAGTTCATTC CAGATATAGT CAAGTTGGCA ACCAGGAATA
  GCCACTACAC TGTGTTACAA GCATATGCTG CCATGTCCTA CTGTGTCTGT CGGGGTGGGG
  K
  TGAGGGTCTG GATGGGGGGT GGGGTGGGGG GATAGCTCAT GATTGCACAG GAAGCACTTT
  ACTAAGTCAC ATTTCCAGCC CTGAAACCAA TTCTTAGGAC TGGGGTGACC ACTGATCACT
  AAGGTACAAG GTCCATGAAA TTGCAAAGCC CCTCAATTAT TAGACAGGCT CTTTGTAAGG
  AGTCATATCT AGAAAGTGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389012202	MGP_WTSI_13_71869978	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	T	T	T	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262232660					SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	T	T	T	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389012202	MGP_WTSI_13_71869978	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:71880649 () rs orientation: forward

Symbol	Name	Function Class
Gm40999	predicted gene, 40999	within coordinates
Rr1731	regulatory region 1731	1004 bp proximal
Rr280205	regulatory region 280205	288 bp proximal
Rr284862	regulatory region 284862	1552 bp proximal