rs262232968 SNP Detail

Summary

• ID
  rs262232968
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24006978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCTTATT CAAAGCAAAG
  GATGGGTCAG ATGCACTGTA AACTCTGACT GCAGGCCCTT GTTAGCCGAG CTTTCTCTTA
  TGGGCTTCGG TAGTTACCAG AACTCTTACT TTGAGTGCTC CTCTATTTTG ATTGGTGGTA
  GCTTTTGCTC ACTGCGCATG TCCTTGCCCA TAATGCAACT GATTTTGATC ATATGTTTGC
  Y
  CACTTATGTA TAGGTCTAAG ATAACAAATA GGGGATTTTC CCAAAATGTT TACTTGGAAA
  ATAAACCTGG GCTTATCATA TATTGTAGTG GGTTCAGTAA GAAATGCCCT CCATGCCGGG
  CATGTTGGCG CATGCCTTTA ATCCCAGCAC TTAGGAGGCA GAGGCAGGCA GATTTCCGAG
  TTCAAGGCCA GCCTGGTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397842275	MGP_WTSI_17_23924971	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262232968					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397842275	MGP_WTSI_17_23924971	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24006978 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8693	CpG island 8693	1684 bp distal
Flywch2	FLYWCH family member 2	1923 bp upstream
Rr523143	regulatory region 523143	1934 bp distal
Rr523144	regulatory region 523144	1433 bp distal
Rr523145	regulatory region 523145	1611 bp distal
Rr523146	regulatory region 523146	603 bp distal
Rr523147	regulatory region 523147	1736 bp proximal
Tssr146663	transcription start site region 146663	1921 bp upstream
Tssr146664	transcription start site region 146664	1882 bp upstream
Tssr146665	transcription start site region 146665	1767 bp upstream
Tssr146666	transcription start site region 146666	1876 bp downstream