rs262242059 SNP Detail

Summary

• ID
  rs262242059
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170472586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTCTTCCG GACTCCAGTG
  AAGCCGCCTT CCAGCCTGTC TTTGCTGAGA CCTCCGACCC AAGGTGGTCT CTGTAGGGAC
  TAAAGTCCCT ACTGTCGCAT CTCTCATGGC CTATCCCCTG CCATTGGTTC TCTGCTTTGC
  TCTGGTGGTG GCACAGGTCT GGGGGTCCAC TACACCTCCC ACAGGGACAA GCGAGCCCCC
  Y
  GATGTGCAAA CAGTGGAGCC CACGGAAGAT GACATTCTGC AAAACGAGGC GGACAACCAG
  GAGAACGTTT TATCTCAGGT AGGATGAGGA ATCGCGTGCC CACCCCTCTT GCCTTGGGGG
  ACCTCAAGGA CCTGAGGCTG GTCCTGGATG AAAGATTTAT GAGCAGCTGT TTTTCTCTGT
  ATTTTTAGTG AAGTGGATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352369472	MGP_WTSI_1_172575148	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262242059					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352369472	MGP_WTSI_1_172575148	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170472586 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	132 bp distal
Olfml2b	olfactomedin-like 2B	within coordinates
Rr28935	regulatory region 28935	within coordinates
Tssr280	transcription start site region 280	666 bp upstream
Tssr9928	transcription start site region 9928	559 bp downstream
Tssr9929	transcription start site region 9929	503 bp downstream
Tssr9930	transcription start site region 9930	447 bp downstream
Tssr9931	transcription start site region 9931	431 bp downstream
Tssr9932	transcription start site region 9932	415 bp downstream
Tssr9933	transcription start site region 9933	180 bp downstream
Tssr14922	transcription start site region 14922	677 bp upstream
Tssr14923	transcription start site region 14923	625 bp upstream