rs262243260 SNP Detail

Summary

• ID
  rs262243260
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98851124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCCCGCC CCTGCGCCTC
  CCTGACAGCG GCTGCCATGG ATCCGACGCA AACTAAACAT TTTCCTAGCG AAGTGGGGCG
  GTGTTTCTGG AGTTCGGGCT CGGCCGCCGC CCCTGCCCTC CTACAGCAGC GGACCCTCGA
  TCCCCCACCC GTCCCCGGCG GTCCCCGTGG TCCCCTGCAG TCCCTGGCTC TGCCAGCGCT
  M
  GCTCATCGGC GCTGCCTTTG TTCTTCCCGG TCTGGGCGTT TCCGTGTCCC GCACTGCGGC
  GGCGGGACTC AAAGACTAAG ATAAACTTAA AGCATGGAGA CCACCCTTTC CCCGCAGAGG
  TGACCAAAGC CTTAGACGTT TCCTTGCAGA TCTGGGGCGA CTGACACCCA CCCTCTATCT
  ACCGAGAGCC GGGGAAGGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395146337	MGP_WTSI_15_98783674	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262243260					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395146337	MGP_WTSI_15_98783674	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98851124 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7685	CpG island 7685	within coordinates
Gm49450	predicted gene, 49450	within coordinates
Gm56698	predicted gene, 56698	1322 bp downstream
Rr370012	regulatory region 370012	within coordinates
Rr404613	regulatory region 404613	227 bp upstream
Rr509236	regulatory region 509236	within coordinates
Rr509237	regulatory region 509237	25 bp proximal
Rr509238	regulatory region 509238	298 bp proximal
Rr509239	regulatory region 509239	450 bp proximal
Rr509240	regulatory region 509240	1951 bp proximal
Tssr132970	transcription start site region 132970	169 bp downstream
Tssr132971	transcription start site region 132971	501 bp upstream
Tssr136333	transcription start site region 136333	1965 bp upstream
Tssr136334	transcription start site region 136334	232 bp downstream
Tssr136335	transcription start site region 136335	285 bp downstream
Tssr136336	transcription start site region 136336	298 bp downstream
Tssr136337	transcription start site region 136337	344 bp downstream
Tssr136338	transcription start site region 136338	354 bp downstream
Tssr136339	transcription start site region 136339	394 bp downstream
Tssr136340	transcription start site region 136340	419 bp downstream
Tssr136341	transcription start site region 136341	445 bp downstream
Tuba1a	tubulin, alpha 1A	within coordinates