rs262254122 SNP Detail

Summary

• ID
  rs262254122
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:103470899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCCCTTT TCGGCCCAAA
  GTGCCGTCCG AGGGGTGGCG GTGCGCTCGG CGCCTCCCGA AGAAGCCCCG GCTGCTCTGC
  TGTGTCTGGA TCGCGCTGCG GCTCCCGGGC TGCGGGGAGC GCCGCCGGCG ACTACATGAC
  AGAGGTTGGA CCACAGGAGC GCGTCGCCAA GTTCACTGCC GCCGTGGCTC GGCTGCTGAC
  M
  TGGACTCCCG CGCGCGGGGC CATGCCCACC GCGATCGGCG CTCCGCGCTG CGCCCGAGCC
  GCCGGGACTG CGGCTTCTCC CGCTAAACCT GCCTCCGGGA CGGAGCGGAG GAGACGGGCA
  GCCCGCGGAG CCAATGGCAG CGCAGGCGCG CTGGTGGGCG GAGGCTGCGG AGCCGCTGGC
  CGCGCGGGCG TCAGGTAGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389767889	MGP_WTSI_13_104124471	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262254122					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389767889	MGP_WTSI_13_104124471	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:103470899 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6053	CpG island 6053	within coordinates
Gm61190	predicted gene, 61190	392 bp downstream
Gm61201	predicted gene, 61201	1321 bp downstream
Mast4	microtubule associated serine/threonine kinase family member 4	within coordinates
Rr485329	regulatory region 485329	389 bp distal
Rr485330	regulatory region 485330	within coordinates
Rr485331	regulatory region 485331	1552 bp proximal
Tssr120897	transcription start site region 120897	1841 bp downstream
Tssr120898	transcription start site region 120898	1802 bp downstream
Tssr120899	transcription start site region 120899	1783 bp downstream
Tssr123874	transcription start site region 123874	38 bp downstream
Tssr123875	transcription start site region 123875	1430 bp downstream
Tssr123876	transcription start site region 123876	1551 bp downstream
Tssr123877	transcription start site region 123877	1570 bp downstream