rs262257099 SNP Detail

Summary

• ID
  rs262257099
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:157269652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCAAAGAC GACATCCTGA
  TAGCTCTACT ACCCTGGACT CTGCTGATCT AGGACATGTC CTCTTCCTCT CTCCTCTTGT
  CCTGCACTAC TGCATTCACA GAGGCCCCCT GTAGGAATAT TCTCATCTCA GGTCCTTGGC
  AGTTTCTCGT TTTTTTCTGT TCTCTCTCTC TCTTTTCTTT CTTTCTCTTT TTTCCTTCCT
  Y
  CCTCCCTCCC TTCCTTCCTT TCCTTCCTTT CCTTTCTTTC CTTCTTTCTT TCTTTCTTTC
  TTTCTTTCTT TCTTTCTTTC TTTCTTTCTT TCTTTCTTTC AAGTTTTTCT CCAGGAACCG
  CAAGCTAACG CTCTCTCTCC CACCACATCT CTGTCCAATC GCATCATAAC TCTCCCAGGT
  GGCCTTACTT TAATCTACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352060310	MGP_WTSI_1_159372213	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C	C	C	T	C	T	T	C	C	C	C	C	T	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262257099					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C	C	C	T	C	T	T	C	C	C	C	C	T	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352060310	MGP_WTSI_1_159372213	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:157269652 () rs orientation: forward

Symbol	Name	Function Class
Gm70539	predicted gene, 70539	within coordinates
Gm71050	predicted gene, 71050	1521 bp upstream
Rr421381	regulatory region 421381	1532 bp distal
Rr421382	regulatory region 421382	1448 bp distal
Rr421383	regulatory region 421383	1112 bp distal
Rr421384	regulatory region 421384	865 bp proximal
Tssr9590	transcription start site region 9590	1426 bp downstream