TGCAAAGGAT GAACAGACCT GAAAGGGGGA GGGACACGGG GACTGGACTA GGTACAACAC CCAAAGGAGA CTTACAAACC ACTACCACAG AACCAGGGTG GGCTTCTGGA AAGAAGCTCC ATTTAAACTG GATGAATGGA GGAGGGCTGA CAGAGGAAGT AGAAGGCCGT TAGCAGAAGA ATTAATGATC TCGTTATCAT Y GAAAATACTG CTCTTGGGCT GGCAAAGTGG CTAAGTAAAT ACAACTGCCA CCAAACCTGA TGACCAGATT CGCACCTGCT CGCAAGGTCA CCCCCCACCA CCACCCCCCA ACGGCTGGAG GCCTGGCGTG CCCGGGTGCT CCACGCCTTG TTAGCTTCGC TGCTTCTCTC CGGGGCCCAG GCGGCCAGGA GATTCCTGGT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss370878707 | MGP_WTSI_7_30067826 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | C | T |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs262258067 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | C | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss370878707 | MGP_WTSI_7_30067826 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr7:28982232 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi18754 | CpG island 18754 | 435 bp distal | ||||||
Gm45977 | predicted gene, 45977 | 1140 bp downstream | ||||||
Gm73729 | predicted gene, 73729 | 1922 bp downstream | ||||||
Rr155861 | regulatory region 155861 | 369 bp proximal | ||||||
Rr167412 | regulatory region 167412 | 231 bp distal | ||||||
Spint2 | serine protease inhibitor, Kunitz type 2 | 895 bp upstream | ||||||
Tssr2177 | transcription start site region 2177 | 1212 bp upstream | ||||||
Tssr2178 | transcription start site region 2178 | 1023 bp upstream | ||||||
Tssr2179 | transcription start site region 2179 | 915 bp upstream | ||||||
Tssr2180 | transcription start site region 2180 | 903 bp upstream | ||||||
Tssr71645 | transcription start site region 71645 | 1119 bp upstream | ||||||
Tssr71646 | transcription start site region 71646 | 872 bp upstream | ||||||
Tssr71647 | transcription start site region 71647 | 834 bp upstream | ||||||
Tssr71648 | transcription start site region 71648 | 817 bp upstream | ||||||
Tssr71649 | transcription start site region 71649 | 767 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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