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rs262258067 SNP Detail
Summary
  • ID
    rs262258067
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:28982232 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGCAAAGGAT GAACAGACCT
    GAAAGGGGGA GGGACACGGG GACTGGACTA GGTACAACAC CCAAAGGAGA CTTACAAACC
    ACTACCACAG AACCAGGGTG GGCTTCTGGA AAGAAGCTCC ATTTAAACTG GATGAATGGA
    GGAGGGCTGA CAGAGGAAGT AGAAGGCCGT TAGCAGAAGA ATTAATGATC TCGTTATCAT
    Y
    GAAAATACTG CTCTTGGGCT GGCAAAGTGG CTAAGTAAAT ACAACTGCCA CCAAACCTGA
    TGACCAGATT CGCACCTGCT CGCAAGGTCA CCCCCCACCA CCACCCCCCA ACGGCTGGAG
    GCCTGGCGTG CCCGGGTGCT CCACGCCTTG TTAGCTTCGC TGCTTCTCTC CGGGGCCCAG
    GCGGCCAGGA GATTCCTGGT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss370878707 MGP_WTSI_7_30067826 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T C T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262258067 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss370878707 MGP_WTSI_7_30067826 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:28982232 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi18754 CpG island 18754 435 bp distal
Gm45977 predicted gene, 45977 1140 bp downstream
Gm73729 predicted gene, 73729 1922 bp downstream
Rr155861 regulatory region 155861 369 bp proximal
Rr167412 regulatory region 167412 231 bp distal
Spint2 serine protease inhibitor, Kunitz type 2 895 bp upstream
Tssr2177 transcription start site region 2177 1212 bp upstream
Tssr2178 transcription start site region 2178 1023 bp upstream
Tssr2179 transcription start site region 2179 915 bp upstream
Tssr2180 transcription start site region 2180 903 bp upstream
Tssr71645 transcription start site region 71645 1119 bp upstream
Tssr71646 transcription start site region 71646 872 bp upstream
Tssr71647 transcription start site region 71647 834 bp upstream
Tssr71648 transcription start site region 71648 817 bp upstream
Tssr71649 transcription start site region 71649 767 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory