rs262260116 SNP Detail

Summary

• ID
  rs262260116
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164175666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAGGAAT GAGTTCCTTT
  AAAACCAGGG TCAAGAGCCG GATACTCAAA TAACGTGTTC CCTGGCCATC TGAAGACTAG
  AGCCAGTATG CAGGTAAGTG GATCACGGGG TGAGGGGTTA GAAGCTACAC ATACCTATTC
  CCTGGGGGCA TTGTGGGATT GTACACACCC GGAACGTTGC CGTGAGGGGA AGCAGGGAGA
  S
  CCCCTGGCAG AGCACACAAT GATGCCTGAA CTGTGACTGT CCTGAGGTCC TAGCCTCAGT
  ACGCGTCATC CCCAGGGTTC TACGCAGTCT AGCGAGCGAT CAAATCAAGC ACGCACCACC
  TGGGTTAGAA GCTAGCATAT ATGCTAGCTT CTAACAGAAT TTTGTCGCCT CTTGTGCTAT
  GCTTGGTGGA AGTTCATTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320605475	CHEV_2_164159482	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262260116					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164175666 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	within coordinates
Tssr744	transcription start site region 744	412 bp downstream
Tssr745	transcription start site region 745	369 bp downstream
Tssr746	transcription start site region 746	362 bp downstream
Tssr747	transcription start site region 747	349 bp upstream
Tssr748	transcription start site region 748	324 bp downstream
Tssr749	transcription start site region 749	287 bp downstream
Tssr750	transcription start site region 750	270 bp downstream
Tssr751	transcription start site region 751	218 bp downstream
Tssr752	transcription start site region 752	156 bp downstream
Tssr753	transcription start site region 753	146 bp downstream
Tssr754	transcription start site region 754	518 bp upstream
Tssr21562	transcription start site region 21562	1010 bp downstream
Tssr21563	transcription start site region 21563	1001 bp downstream
Tssr21564	transcription start site region 21564	970 bp downstream
Tssr21565	transcription start site region 21565	957 bp downstream
Tssr21566	transcription start site region 21566	946 bp downstream
Tssr21567	transcription start site region 21567	934 bp downstream
Tssr21568	transcription start site region 21568	925 bp downstream
Tssr21569	transcription start site region 21569	420 bp downstream
Tssr21570	transcription start site region 21570	378 bp downstream
Tssr21571	transcription start site region 21571	350 bp downstream
Tssr21572	transcription start site region 21572	336 bp downstream
Tssr21573	transcription start site region 21573	305 bp downstream
Tssr21574	transcription start site region 21574	243 bp downstream
Tssr21575	transcription start site region 21575	530 bp upstream
Tssr21576	transcription start site region 21576	546 bp upstream
Tssr21577	transcription start site region 21577	565 bp upstream
Tssr27433	transcription start site region 27433	390 bp upstream
Tssr27434	transcription start site region 27434	360 bp upstream
Tssr27435	transcription start site region 27435	335 bp upstream
Tssr27436	transcription start site region 27436	318 bp upstream
Tssr27437	transcription start site region 27437	277 bp upstream
Tssr27438	transcription start site region 27438	260 bp upstream
Tssr27439	transcription start site region 27439	255 bp upstream
Tssr27440	transcription start site region 27440	239 bp upstream
Tssr27441	transcription start site region 27441	190 bp upstream
Tssr27442	transcription start site region 27442	180 bp upstream
Tssr27443	transcription start site region 27443	121 bp upstream
Tssr27444	transcription start site region 27444	110 bp upstream
Tssr27445	transcription start site region 27445	503 bp downstream
Tssr27446	transcription start site region 27446	547 bp downstream
Tssr27447	transcription start site region 27447	642 bp downstream
Tssr27448	transcription start site region 27448	1256 bp downstream