rs262266649 SNP Detail

Summary

• ID
  rs262266649
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:144576880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTTAACA CAAGCAGAAA
  TAATATCACC GTATCATGGG GCCAGAGCTT GCGTGAGGTG GGCCTAAGTG CTCTGGCCAG
  GCAGTCCCTG GACACTGGGC CTAGCAAGGC CAAGATCCTT TCCCTGAGAC CATCTGTGCC
  TGTCCAAAAA GTGACCCTTA GTTACATAGT CACCTTTCAT TTGGCTTTTG TTGTGGTTTG
  K
  TTTGAGGTTT GTTTTTTGTT TTTAACTATG CGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTCGG TGTGTCGGTG TGTCGGTGTA GGGTCTCATG GAGGCCAGAA
  GGGGGAGCTG GAGCGCTTAG AGATGAAGTT ACAAGAGGTT GTGAGCTACC TAATGTGTGT
  GCTGGAAGCT GAACTGAATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321711312	CHEV_5_145400939	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262266649					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:144576880 () rs orientation: forward

Symbol	Name	Function Class
D5Dcr36	DNA Segment, Chr 5, Derry C. Roopenian 36	403 bp proximal
D5Mit43	DNA segment, Chr 5, Massachusetts Institute of Technology 43	358 bp proximal
D5Mit43.2	DNA segment, Chr 5, Massachusetts Institute of Technology 43.2	465 bp proximal
Gm71822	predicted gene, 71822	within coordinates
Rr624456	regulatory region 624456	1167 bp distal
Rr624457	regulatory region 624457	1222 bp distal