rs262273265 SNP Detail

Summary

• ID
  rs262273265
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48654002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCTTCAC ACATCCTCCC
  CGAGATTAAT ATCCACCTAT AGGAAGGGTA ACAGGGGCAG CTGGAATTAG TCACTGAAGG
  AGCTGTGAGG GTGGCACTAG TTGTGAGGTA GGGGACTCGT TAAGACACTG CCAAGAGCCC
  TTAAACACTC AAGAAGCACT TAAACCATAA GTGGAGGGGC AGAATGGGAG AGAAGAGAGA
  M
  AGACAGACTA GGATTTGCAT CTTCCTGGAG GTCCTCCCAG ATTCGACCTC AGCGCTCTGT
  GGGAGGTGAG GATGCTGTAG GCTTTATCAG TGTATCCTCA CCTGTAATGG ACTGACTCAT
  TCCAGTGTGG GCTGGGTGCC TCCTGTTCCT GCAAAGTCAT GGACAAACCC AGGTAGGAGA
  AGAGGCTGCC CTGCATCTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325408103	CHEV_17_48486299	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262273265					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48654002 () rs orientation: forward

Symbol	Name	Function Class
Gm65373	predicted gene, 65373	1755 bp downstream
Rr335233	regulatory region 335233	802 bp distal
Rr335234	regulatory region 335234	1 bp distal
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145093	transcription start site region 145093	557 bp downstream
Tssr145094	transcription start site region 145094	529 bp downstream
Tssr145095	transcription start site region 145095	481 bp downstream
Tssr145096	transcription start site region 145096	448 bp downstream
Tssr145097	transcription start site region 145097	527 bp upstream
Tssr145098	transcription start site region 145098	854 bp upstream
Tssr145099	transcription start site region 145099	1506 bp upstream
Tssr145100	transcription start site region 145100	1535 bp upstream
Tssr145101	transcription start site region 145101	1572 bp upstream
Tssr145102	transcription start site region 145102	1671 bp upstream
Tssr148525	transcription start site region 148525	1716 bp downstream