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rs262285626 SNP Detail
Summary
  • ID
    rs262285626
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:123258612 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGAGGGAAAG CTGGAAAGGG
GATAACATTT GAAATGTAAA TAAAGAAAAT CTCCAATTAA CAAAAAAGTA GTAAAGTGAC
TAGTCTTCAA AATGTTTGGG CCATATGAAT GCTGTATTCA AAAAAAATCT TTTTTTTTTT
TTTTTTTTGA GACAGGGTTT CTCTGTGCAG CCCTGGCTGT CCTGGAACTC ATTCTGTAGA
Y
CAGGCTGGCC TCGAACTCAG AAATCTGCCT GCCTCTGCCT CCCAAGTGCT GGGATTAAAG
GCATGTGCCA TCACTGCCCG GCTGTATGCA AATTCTAATG GTGTCTTTTT TGAGGAATAT
GTCATTGAGA ATATGAATAG TTTATTACTT TATTTTTGTG GCTAAAGTTG TTTTTCTGTA
ACCTAATGTA CAAAACACTA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss369922353 MGP_WTSI_6_123231671 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C T C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262285626 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss369922353 MGP_WTSI_6_123231671 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:123258612 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Clec4e C-type lectin domain family 4, member e 136 bp downstream
Tssr58808 transcription start site region 58808 1077 bp upstream
Tssr58809 transcription start site region 58809 1739 bp upstream
Tssr58810 transcription start site region 58810 1765 bp upstream
Tssr58811 transcription start site region 58811 1801 bp upstream
Tssr63019 transcription start site region 63019 81 bp upstream
Tssr63020 transcription start site region 63020 840 bp downstream
Tssr63021 transcription start site region 63021 926 bp downstream
Tssr63022 transcription start site region 63022 961 bp downstream
Tssr63023 transcription start site region 63023 989 bp downstream
Tssr63024 transcription start site region 63024 1092 bp downstream
Tssr63025 transcription start site region 63025 1145 bp downstream
Tssr63026 transcription start site region 63026 1156 bp downstream
Tssr63027 transcription start site region 63027 1205 bp downstream
Tssr63028 transcription start site region 63028 1218 bp downstream
Tssr63029 transcription start site region 63029 1249 bp downstream
Tssr63030 transcription start site region 63030 1279 bp downstream
Tssr63031 transcription start site region 63031 1336 bp downstream
Tssr63032 transcription start site region 63032 1360 bp downstream
Tssr63033 transcription start site region 63033 1385 bp downstream
Tssr63034 transcription start site region 63034 1404 bp downstream
Tssr63035 transcription start site region 63035 1425 bp downstream
Tssr63036 transcription start site region 63036 1479 bp downstream
Tssr63037 transcription start site region 63037 1509 bp downstream
Tssr63038 transcription start site region 63038 1546 bp downstream
Tssr63039 transcription start site region 63039 1605 bp downstream
Tssr63040 transcription start site region 63040 1663 bp downstream
Tssr63041 transcription start site region 63041 1712 bp downstream
Tssr63042 transcription start site region 63042 1737 bp downstream
Tssr63043 transcription start site region 63043 1747 bp downstream
Tssr63044 transcription start site region 63044 1769 bp downstream
Tssr63045 transcription start site region 63045 1860 bp downstream
Tssr63046 transcription start site region 63046 1879 bp downstream
Tssr63047 transcription start site region 63047 1902 bp downstream
Tssr63048 transcription start site region 63048 1930 bp downstream
Tssr63049 transcription start site region 63049 1945 bp downstream
Tssr63050 transcription start site region 63050 1969 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory