rs262287121 SNP Detail

Summary

• ID
  rs262287121
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:70110179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAAAGGCC GAGAAGCGAT
  AGGATTTTAC ATTTCCAGAT TTCAACTGAG AAAATTATAC TCAAGCCTGT CCAGTTTTGA
  GGTGCAAAGT AACTTGCAGC CTCCTGAGTA GCAGCGTCCA TTTCTCCTTG TGTCAAAATC
  TGTATTCTTA AAAAAAAATT TTTTTGTATG TCTGTGTATC AGTATATATG TGGCAGGGTG
  R
  AAAATATTTG AAAGTTGGTT TCCTCTTTCC AGACCGTGGG TTCTGGGAAT ATAATTCCAG
  TTATATGCCT TGTGGCAAGC ACTTTTTACC TAGTGAGCCA TCATGGCATC AAGCCCCCAT
  TCTGTATTCT TGCAAAGGAA CCACTGGACA GAAAGGACAC AGGGTAGTTA TACTTGGGAG
  CTTGGCCAGA AAAGTTTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325235746	CHEV_16_70313536	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262287121					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:70110179 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8364	CpG island 8364	545 bp proximal
Gbe1	1,4-alpha-glucan branching enzyme 1	658 bp upstream
Rr517848	regulatory region 517848	168 bp proximal
Tssr138939	transcription start site region 138939	676 bp upstream
Tssr138940	transcription start site region 138940	707 bp upstream
Tssr138941	transcription start site region 138941	720 bp upstream
Tssr138942	transcription start site region 138942	766 bp upstream
Tssr138943	transcription start site region 138943	800 bp upstream
Tssr138944	transcription start site region 138944	828 bp upstream
Tssr138945	transcription start site region 138945	1186 bp upstream
Tssr138946	transcription start site region 138946	1376 bp upstream