rs262288540 SNP Detail

Summary

• ID
  rs262288540
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:91858997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttccgaagg tccagagttc aaatcccagc
  aaccacatgg tggctcacaa ccatccctaa tgaaatctga tgccctcttc tggagtgtct
  gaagacagct acagtgtact tacatataat caataaataa atctttaaaa aaaaaaaaaa
  T
  AAGAAACCAG GTTTCAAAGA CCACAAGGTC AGTGGGTGGC TTAGTAAATA TACAAAGACA
  GACACAAAAG TAGCCAGCTC AGCTGCAAGA CTCCCTCCAC AAAGTCTGCT GAGTTTAAAA
  GGATGGCTTC TTATTTATAT CCCTGAAGGT                                 
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322789566	CHEV_8_93656268	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262288540					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:91858997 () rs orientation: forward

Symbol	Name	Function Class
Aktip	AKT interacting protein	within coordinates
Cpgi20808	CpG island 20808	1049 bp proximal
Rr368579	regulatory region 368579	1713 bp upstream
Rr667489	regulatory region 667489	722 bp proximal
Rr667490	regulatory region 667490	1618 bp proximal
Tssr82405	transcription start site region 82405	1580 bp downstream
Tssr82406	transcription start site region 82406	1658 bp downstream