rs262293423 SNP Detail

Summary

• ID
  rs262293423
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:30329202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCACACAC ATTCATGTAC
  ACAGGGCTCT TGTTCAGACT TGCTCTCCAG ACCCAGGGAC ACAAACAGTG GCAGGTGTCA
  GCACACACCA GTGCACACAG CAAACAGGGA AGACTTACGC CTGCATTTGT AGCCTTGCTT
  GTTGAGGCCC CTGAAAGGCA AAGCCCCGAC AGAATAAGTG AGAATGCTCC AGTCCAGTCC
  Y
  TCCCTCCCTG CGCCACCTGC AGCAGGGCTC ACCAGCTCTC ACCAGACAAA CTCTTTGCAC
  ACAGAACAGA AGGTGGGCTG CCCGAAGAAG GTGGCGATAA ACTCGTGGTT CTTGATGTAG
  TGGATCTTGG CCTGTTTAAT GGCTCCACGA CGGTTCATGG TTGGAAACTT TGCCTCCTCC
  TCACTACGCA TAGACTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390686983	MGP_WTSI_14_31420431	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262293423					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390686983	MGP_WTSI_14_31420431	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:30329202 () rs orientation: forward

Symbol	Name	Function Class
Gm62449	predicted gene, 62449	628 bp upstream
Prkcd	protein kinase C, delta	within coordinates
Rr292184	regulatory region 292184	within coordinates
Rr292185	regulatory region 292185	798 bp proximal
Rr404042	regulatory region 404042	504 bp upstream
Tssr4362	transcription start site region 4362	1336 bp upstream
Tssr4363	transcription start site region 4363	524 bp downstream
Tssr124839	transcription start site region 124839	666 bp upstream
Tssr127872	transcription start site region 127872	532 bp upstream
Tssr127873	transcription start site region 127873	534 bp downstream
Tssr127874	transcription start site region 127874	563 bp downstream
Tssr127875	transcription start site region 127875	578 bp downstream
Tssr127876	transcription start site region 127876	1900 bp downstream