rs262301343 SNP Detail

Summary

• ID
  rs262301343
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19045894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAAACAA AGACTAGAAT
  TTACTATGTA CCCAAGGATG ACAATGAACA TCTTGCTCTC ACCTCTATAT TGTCGCCAGG
  CCTGGTTTAT TACTGGGGAT GTAATCCAGG GGCCTCCTGC ATGCTAGGGG AGCCCTCTGC
  CAACGGCTGC TGCATCGCTG GCCAGGGTCC TGATTCTTAA GTACCCACTA AGAAGGATGC
  Y
  ACCAGCAACT GCAAAAAGCC TGGGAGACCC CAGGCCAAGC CTAGGGAAAG AAAACTTTTC
  CAGGGGAGAT GCCACACACA CATGTCCATT CACCCTAGAC AGGGAGCCAG CTCAGAAGAG
  ACCAAAGTCC AATTTGCTGA ACCGATGAAT TTTCTATTAG AGTTACTTAC AGGAGTGTGC
  ATGGGTGAGG GGTGACTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370746419	MGP_WTSI_7_19897318	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	C	C	C	C	T	C	T	T	C	C	C	C	C	C	C	T	T	C	T	C	C	C	C	T	C	C	C	T	C	T	T	C	T	C	T	C	T	C	C	T	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262301343					SNP	T	T	T	C	C	C	C	C	T	C	T	T	C	C	C	C	C	C	C	T	T	C	T	C	C	C	C	T	C	C	C	T	C	T	T	C	T	C	T	C	T	C	C	T	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370746419	MGP_WTSI_7_19897318	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19045894 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18468	CpG island 18468	1212 bp distal
Fosb	FBJ osteosarcoma oncogene B	1924 bp upstream
Gm57205	predicted gene, 57205	786 bp downstream
Rr167154	regulatory region 167154	1093 bp distal
Rr400144	regulatory region 400144	1450 bp downstream
Tssr2108	transcription start site region 2108	1482 bp downstream
Tssr70904	transcription start site region 70904	1949 bp upstream
Tssr70905	transcription start site region 70905	1919 bp upstream
Tssr70906	transcription start site region 70906	1741 bp upstream