rs262308214 SNP Detail

Summary

• ID
  rs262308214
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135303408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGGACGT CCTGCAGGGG
  GAGGATGGGG CAGCGTCACC CTGCCCCCAT TCCTAGAAAC AGGCATCCAT TGAGAGGAAG
  TTCAGAGAAG CTTTGTCCCC ATCGGTGCCC ACAGGGCCTG GGCCCTGGCA GCTGCACTGG
  CTCCTGAGAT GGCCCCTTCT CCCTCTGAAT GGACAGCTCC AACTATAGCC TCACTCCTCA
  M
  CGGTAGGGGT GGCCGCCGCC ACTTGAGACA CAGCCAGTTA AACACTTTAC AGTGGAAACT
  CTTTTTCTTC ATGGAGCAAG CCTGCAAAAA ATACTACATA AGCTATCAGG GTCAACAGTT
  AGTTACAGGT GGAAAGTCTC AAAGAAGAAA GTCAATGTAC CTTTACCAAC TCGTGTGGAG
  TTGATGCAGG ACTCAGCGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351539951	MGP_WTSI_1_137272247	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262308214					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351539951	MGP_WTSI_1_137272247	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135303408 () rs orientation: forward

Symbol	Name	Function Class
Cpgi790	CpG island 790	194 bp distal
Rr12587	regulatory region 12587	8 bp distal
Rr28596	regulatory region 28596	7 bp distal
Shisa4	shisa family member 4	433 bp upstream
Tssr13846	transcription start site region 13846	1706 bp upstream
Tssr13847	transcription start site region 13847	1236 bp upstream
Tssr13848	transcription start site region 13848	737 bp upstream
Tssr13849	transcription start site region 13849	724 bp upstream
Tssr13850	transcription start site region 13850	572 bp upstream
Tssr13851	transcription start site region 13851	560 bp upstream
Tssr13852	transcription start site region 13852	442 bp upstream
Tssr13853	transcription start site region 13853	425 bp upstream
Tssr13854	transcription start site region 13854	406 bp upstream
Tssr13855	transcription start site region 13855	393 bp upstream
Tssr13856	transcription start site region 13856	385 bp upstream