rs262309778 SNP Detail

Summary

• ID
  rs262309778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79491371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGGGTCC CGGACAATTT
  TCTCTCTTCT GAGCCTCAGT ATTCCTGTCC ATCCAAGGAA CCCTTTCATA CCACAACCCA
  GTACCCCTAG GAACTGCCTC CCCCTACAGA TGAGCAATGG AGCTACTGAG GTCTCCTGAA
  GTCTCCAACC TCTCCCTTTC CATAAGCCCC AGATGCAGCC CTGTGTCAGA CCGTGCCCAC
  R
  CCCTTGAACC TTACTTCTTG ACGTCTCCTT CCATGTACTC GCTGCGGTAG AAGCCAGCCA
  GGTCATCAGC CAGTTCCCCC TGGAACTGGC TGTCCATCTC GTACTGACGG CCCTCTACCA
  GGGACCCCTG CAGGTGCACC ACCAGGTACT CAGTACGCTC TACCAGTTCC GTTTTGTCAA
  TGTTAGGTGC CGGAGTGCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372032942	MGP_WTSI_7_86986509	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262309778					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372032942	MGP_WTSI_7_86986509	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79491371 () rs orientation: forward

Symbol	Name	Function Class
Anpep	alanyl aminopeptidase, membrane	within coordinates
Gm71751	predicted gene, 71751	796 bp upstream
Tssr67371	transcription start site region 67371	206 bp upstream
Tssr67372	transcription start site region 67372	394 bp upstream
Tssr67373	transcription start site region 67373	854 bp upstream
Tssr67374	transcription start site region 67374	900 bp upstream
Tssr67375	transcription start site region 67375	934 bp upstream
Tssr73161	transcription start site region 73161	706 bp upstream
Tssr73162	transcription start site region 73162	648 bp upstream
Tssr73163	transcription start site region 73163	627 bp upstream
Tssr73164	transcription start site region 73164	464 bp upstream
Tssr73165	transcription start site region 73165	62 bp downstream
Tssr73166	transcription start site region 73166	103 bp downstream
Tssr73167	transcription start site region 73167	311 bp downstream
Tssr73168	transcription start site region 73168	323 bp downstream
Tssr73169	transcription start site region 73169	351 bp downstream
Tssr73170	transcription start site region 73170	382 bp downstream
Tssr73171	transcription start site region 73171	453 bp downstream
Tssr73172	transcription start site region 73172	481 bp downstream
Tssr73173	transcription start site region 73173	497 bp downstream
Tssr73174	transcription start site region 73174	585 bp downstream
Tssr73175	transcription start site region 73175	606 bp downstream
Tssr73176	transcription start site region 73176	664 bp downstream
Tssr73177	transcription start site region 73177	694 bp downstream
Tssr73178	transcription start site region 73178	720 bp downstream
Tssr73179	transcription start site region 73179	784 bp downstream
Tssr73180	transcription start site region 73180	851 bp downstream
Tssr73181	transcription start site region 73181	934 bp downstream
Tssr73182	transcription start site region 73182	953 bp downstream
Tssr73183	transcription start site region 73183	992 bp downstream
Tssr73184	transcription start site region 73184	1652 bp downstream