rs262314830 SNP Detail

Summary

• ID
  rs262314830
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:80861876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCACTAGC AAGGTCACTG
  TGGAGTTGTC AAGGCCAGAC TTTTGGTGGG CGGAGAGAAG AGCCTTAGAC TTGTACGTGC
  ATCTTGGCTA AAGGCAATTT CTCTAGGGAT CCAGCTACCA GCTGAAAAAA AACAAAACAA
  AACAAAAAAA AACAAAACAA AAAATCTACC CTCTAAGACT GCTAGTTGAA AACACCACAG
  W
  CTGGGTGGAA TAACGGGTGT CAGTACAAAA ACTTTTCCTG TTTTTCAAGA CACCTTGGAG
  GAGCCAGTCA TATTTTTATA GGACAGCGTG CTTTAACTTG ACAAAGGAGC CGCGTGCCAA
  AGGCCAGAAA AGAGAACCAG TTTCTAAAGC TGCTCCAGCC TTATCCGCTC CGGAAGCCGC
  CCTGTATCCT CCTTTGGTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322284541	CHEV_7_88357014	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262314830					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:80861876 () rs orientation: forward

Symbol	Name	Function Class
1700023D08Rik	RIKEN cDNA 1700023D08 gene	58 bp downstream
Cpgi19350	CpG island 19350	90 bp proximal
Gm44968	predicted gene 44968	1341 bp downstream
Gm73624	predicted gene, 73624	within coordinates
Pde8a	phosphodiesterase 8A	1468 bp upstream
Tssr67494	transcription start site region 67494	1130 bp upstream
Tssr67495	transcription start site region 67495	1159 bp upstream
Tssr67496	transcription start site region 67496	1195 bp upstream
Tssr67497	transcription start site region 67497	1217 bp upstream
Tssr67498	transcription start site region 67498	1366 bp upstream
Tssr67499	transcription start site region 67499	1439 bp upstream
Tssr67500	transcription start site region 67500	1623 bp upstream
Tssr67501	transcription start site region 67501	1649 bp upstream
Tssr67502	transcription start site region 67502	1917 bp upstream
Tssr73321	transcription start site region 73321	997 bp downstream
Tssr73322	transcription start site region 73322	1073 bp downstream
Tssr73323	transcription start site region 73323	1523 bp downstream
Tssr73324	transcription start site region 73324	1547 bp downstream