rs262321152 SNP Detail

Summary

• ID
  rs262321152
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122827160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGATGCTA AAGCAATGGA
  CATGTGGTCC CAGGACATCA CAGCTTCCCC CAAGGAACTT TCTGGATCAG TAATCAATAG
  CAGGACTCCG ACAAGATGGT ATGGAGTCCA GCAGATAAAA AAGACAGTGA CCACAGCCAC
  AGCCACCCGA AAGGTTTTGT TCCGAGACTT GGTGAAGTTG GTTTTTCGCA TTCTGAAGAC
  R
  ATGAGGCTGT AACAAATTAC CATGATGAAA AACGGCACCA GGAAGCCCAC CACCAGCCTT
  GTGATGGTTA TTGCCATCAG CGGTGTCGGC ACATGATTGT CATACGTGAA TTGGTCAACA
  TAATCCCCCT GGAAATCATA GGGGTATAAA TGACCACTAG AAGCAGTAGG GAAAAGTTCT
  GTGTGAGCAG AGAGAAAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369914782	MGP_WTSI_6_122800219	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262321152					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369914782	MGP_WTSI_6_122800219	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122827160 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Tssr58711	transcription start site region 58711	256 bp upstream
Tssr58712	transcription start site region 58712	374 bp upstream
Tssr58713	transcription start site region 58713	430 bp upstream
Tssr62970	transcription start site region 62970	1982 bp upstream
Tssr62971	transcription start site region 62971	1922 bp upstream
Tssr62972	transcription start site region 62972	1822 bp upstream
Tssr62973	transcription start site region 62973	1761 bp upstream
Tssr62974	transcription start site region 62974	1675 bp upstream
Tssr62975	transcription start site region 62975	1590 bp upstream
Tssr62976	transcription start site region 62976	1501 bp upstream
Tssr62977	transcription start site region 62977	1443 bp upstream
Tssr62978	transcription start site region 62978	1389 bp upstream
Tssr62979	transcription start site region 62979	1356 bp upstream
Tssr62980	transcription start site region 62980	1340 bp upstream
Tssr62981	transcription start site region 62981	1321 bp upstream
Tssr62982	transcription start site region 62982	1162 bp upstream
Tssr62983	transcription start site region 62983	704 bp upstream
Tssr62984	transcription start site region 62984	608 bp upstream
Tssr62985	transcription start site region 62985	569 bp upstream
Tssr62986	transcription start site region 62986	274 bp upstream
Tssr62987	transcription start site region 62987	148 bp upstream
Tssr62988	transcription start site region 62988	82 bp upstream
Tssr62989	transcription start site region 62989	66 bp downstream
Tssr62990	transcription start site region 62990	112 bp downstream
Tssr62991	transcription start site region 62991	139 bp downstream
Tssr62992	transcription start site region 62992	164 bp downstream
Tssr62993	transcription start site region 62993	258 bp downstream
Tssr62994	transcription start site region 62994	364 bp downstream
Tssr62995	transcription start site region 62995	481 bp downstream
Tssr62996	transcription start site region 62996	541 bp downstream
Tssr62997	transcription start site region 62997	683 bp downstream
Tssr62998	transcription start site region 62998	738 bp downstream
Tssr62999	transcription start site region 62999	809 bp downstream
Tssr63000	transcription start site region 63000	866 bp downstream
Tssr63001	transcription start site region 63001	889 bp downstream