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rs262323442 SNP Detail
Summary
  • ID
    rs262323442
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:149979539 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTTAAAGACA ACTAAATCAT
CAATATTGAA TAAGAAATTA TAGTAAAAAA TCAGTAAATT GAACTTTCTC CATACTTAAT
TTTCTAGGTG GACTTAAATC ACATTTATGG TGAAACTCTG GACAGACAAC ATAAACTGCG
CCTTTTCAAG GATGGAAAAT TGAAATATCA GGTATTTTCC TTATGGTTTA AAAATGACCA
Y
CTGTCATTTA GACTTACATA TTAAAACTAT TGTGGCTTTT TTTTCCTTCT TTTAACTCTG
TTATTATTGT TGTGATTTAG GTCATTGGTG GAGAGGTGTA TCCCCCCACA GTCAAAGACA
CTCAGGTAGA GATGATCTAC CCTCCTCACA TCCCTGAGAA CCTGCAGTTT GCTGTGGGGC
AGGAAGTCTT TGGTCTGGTG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss351888749 MGP_WTSI_1_151950918 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262323442 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss351888749 MGP_WTSI_1_151950918 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:149979539 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ptgs2 prostaglandin-endoperoxide synthase 2 within coordinates
Rr12935 regulatory region 12935 462 bp proximal
Rr24983 regulatory region 24983 494 bp proximal
Tssr242 transcription start site region 242 983 bp downstream
Tssr9230 transcription start site region 9230 1675 bp downstream
Tssr9231 transcription start site region 9231 1642 bp downstream
Tssr9232 transcription start site region 9232 1599 bp downstream
Tssr9233 transcription start site region 9233 1143 bp downstream
Tssr9234 transcription start site region 9234 1114 bp downstream
Tssr9235 transcription start site region 9235 1083 bp downstream
Tssr9236 transcription start site region 9236 1058 bp downstream
Tssr9237 transcription start site region 9237 1026 bp downstream
Tssr9238 transcription start site region 9238 995 bp downstream
Tssr9239 transcription start site region 9239 961 bp downstream
Tssr9240 transcription start site region 9240 947 bp downstream
Tssr9241 transcription start site region 9241 917 bp downstream
Tssr9242 transcription start site region 9242 901 bp downstream
Tssr9243 transcription start site region 9243 774 bp downstream
Tssr9244 transcription start site region 9244 723 bp downstream
Tssr9245 transcription start site region 9245 687 bp downstream
Tssr9246 transcription start site region 9246 668 bp downstream
Tssr9247 transcription start site region 9247 533 bp downstream
Tssr9248 transcription start site region 9248 100 bp downstream
Tssr9249 transcription start site region 9249 86 bp downstream
Tssr9250 transcription start site region 9250 72 bp upstream
Tssr9251 transcription start site region 9251 118 bp upstream
Tssr9252 transcription start site region 9252 173 bp upstream
Tssr9253 transcription start site region 9253 203 bp upstream
Tssr9254 transcription start site region 9254 230 bp upstream
Tssr9255 transcription start site region 9255 249 bp upstream
Tssr9256 transcription start site region 9256 489 bp upstream
Tssr9257 transcription start site region 9257 513 bp upstream
Tssr9258 transcription start site region 9258 536 bp upstream
Tssr9259 transcription start site region 9259 561 bp upstream
Tssr9260 transcription start site region 9260 616 bp upstream
Tssr9261 transcription start site region 9261 671 bp upstream
Tssr9262 transcription start site region 9262 679 bp upstream
Tssr9263 transcription start site region 9263 701 bp upstream
Tssr9264 transcription start site region 9264 746 bp upstream
Tssr9265 transcription start site region 9265 777 bp upstream
Tssr9266 transcription start site region 9266 866 bp upstream
Tssr9267 transcription start site region 9267 1157 bp upstream
Tssr9268 transcription start site region 9268 1213 bp upstream
Tssr9269 transcription start site region 9269 1596 bp upstream
Tssr9270 transcription start site region 9270 1636 bp upstream
Tssr9271 transcription start site region 9271 1660 bp upstream
Tssr9272 transcription start site region 9272 1690 bp upstream
Tssr9273 transcription start site region 9273 1742 bp upstream
Tssr9274 transcription start site region 9274 1760 bp upstream
Tssr9275 transcription start site region 9275 1787 bp upstream
Tssr9276 transcription start site region 9276 1802 bp upstream
Tssr9277 transcription start site region 9277 1852 bp upstream
Tssr9278 transcription start site region 9278 1873 bp upstream
Tssr9279 transcription start site region 9279 1894 bp upstream
Tssr9280 transcription start site region 9280 1911 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory