rs262328688 SNP Detail

Summary

• ID
  rs262328688
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:135398106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAGTTTT GACTTAAACC
  TATTTTAGAG TTCGGGGGTC TCACTACTGA GTTCAAGTGG AAATACAACT TTGAAAGGCC
  AGGGATCAAT CAGGTAGTGA GCATGCAGTT TTATTTTGGT ACTTAACCCT CCGCTCAGCG
  TTCCACTTAT GAAGTTATAA AAAACCCTCT CAGTGGGATG TTGTTGAGGG AAACACAGGT
  K
  CCCCCCCCCA CACTGTATAT TAGAGAGTCT TTAAGTGACC TTAAAGAGCC CTGTAATCAA
  CCTTAAAGCT ATATCATTAA ATTGTAGAGA CCGTTTTGCC ATCTAGAGTT CAGAGGCTTC
  CTATAGATGG AAGACAACGA TGGTTGTTAT TATTTATGGG ACATTAGAAA TTGTAACCTA
  CGGGCCTGGG AAATGACTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359841234	MGP_WTSI_3_135355309	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262328688					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359841234	MGP_WTSI_3_135355309	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135398106 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13858	CpG island 13858	365 bp distal
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	798 bp upstream
Rr398044	regulatory region 398044	1907 bp downstream
Rr585767	regulatory region 585767	309 bp distal
Rr585768	regulatory region 585768	685 bp proximal
Tssr35825	transcription start site region 35825	1089 bp upstream
Tssr35826	transcription start site region 35826	1074 bp upstream
Tssr35827	transcription start site region 35827	1032 bp upstream
Tssr35828	transcription start site region 35828	975 bp upstream
Tssr35829	transcription start site region 35829	938 bp upstream
Tssr35830	transcription start site region 35830	928 bp upstream
Tssr35831	transcription start site region 35831	866 bp upstream
Tssr35832	transcription start site region 35832	834 bp upstream
Tssr35833	transcription start site region 35833	781 bp upstream
Tssr35834	transcription start site region 35834	364 bp upstream