rs262338630 SNP Detail

Summary

• ID
  rs262338630
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105722035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCAGCT ATGTGGTAGG
  CCTGCTACCA TGCCTGTCTT CCATGTGAGT CAGAGGGGAG TTATGGGGCT AACAGGAACT
  TTGGATGGCA AGTCTGCCCT GCACACCTGA CCAGAGAGCA GTCAAGCAGT AGAGAAGCCA
  GAGGAGTAGA GTGGAGCCAC GGAAATGGCG ACAAACACCA TCCTGAGTGC CCCCAAAGAG
  W
  TAACTGGTCC AGATGCCTTT GTAATACCTT GAATATCATT TTAAATGAAA AGCCTAAGAC
  TATTTCTTGC CCCTGTTTGG TTTTTTAAGA CAGGGTCTTC TGAAGCCCAG ATTTGGTCTT
  CAATGTGGAA TAAACTCCTA GTCTTTGTGC TTCCGATTCT CAAACTCTGG ATGGGTGCAC
  CATCACACCC AGGCTGAAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320863279	CHEV_3_105617637	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262338630					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105722035 () rs orientation: forward

Symbol	Name	Function Class
Gm5547	predicted gene 5547	848 bp upstream
Rr582787	regulatory region 582787	356 bp proximal
Rr582788	regulatory region 582788	871 bp proximal
Rr582789	regulatory region 582789	1414 bp proximal
Tssr31084	transcription start site region 31084	811 bp upstream