rs262345706 SNP Detail

Summary

• ID
  rs262345706
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101898533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGAGGCT GAACAACAGG
  CAGGGCAGGG TAAATGCGAG ATCAGGGCCT GGGTACATCT ATGTGGTTGG GGGAAGAGCC
  GGAAGGAGGC GAATGTGGTC GACACTATGG CGAATGTGGA AGACAGTATG GGGAGTTCAG
  GTGAGGGAGA AGACGTTAAG AGCTCTCAAT CATTACCGAA AGCCAGTACT CCAGCTGCCT
  Y
  TCAAAGTCAT GGAAGTTGTC AGTGACTATC GGTATAGTGG CCCTTTCCTT CCTCAGTTTA
  TCCTCAAAAT AAAAAAGGCC AGATTGAGTC TGATAGACAC AACAGACGTG TTCACTAAAT
  ACCCGCTGTT GTATGGGACA GGAATAAAGA GGTTGGCTCA GAAAAATACA GAGAGGGAAT
  GGGGATTCCC CCACCGAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353649	CHEV_7_109397840	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262345706					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101898533 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	316 bp proximal
Rhog	ras homolog family member G	within coordinates
Rr652561	regulatory region 652561	1795 bp distal
Rr652562	regulatory region 652562	within coordinates
Rr652563	regulatory region 652563	752 bp proximal
Rr652564	regulatory region 652564	1595 bp proximal
Tssr2354	transcription start site region 2354	933 bp upstream
Tssr68327	transcription start site region 68327	1568 bp downstream
Tssr68328	transcription start site region 68328	294 bp upstream
Tssr68329	transcription start site region 68329	376 bp upstream
Tssr68330	transcription start site region 68330	894 bp upstream
Tssr73939	transcription start site region 73939	36 bp downstream
Tssr73940	transcription start site region 73940	86 bp downstream
Tssr73941	transcription start site region 73941	128 bp downstream
Tssr73942	transcription start site region 73942	216 bp downstream
Tssr73943	transcription start site region 73943	749 bp downstream
Tssr73944	transcription start site region 73944	760 bp downstream
Tssr73945	transcription start site region 73945	801 bp downstream
Tssr73946	transcription start site region 73946	997 bp downstream
Tssr73947	transcription start site region 73947	1140 bp downstream
Tssr73948	transcription start site region 73948	1165 bp downstream
Tssr73949	transcription start site region 73949	1201 bp downstream
Tssr73950	transcription start site region 73950	1250 bp downstream