rs262351624 SNP Detail

Summary

• ID
  rs262351624
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130660662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    atcatccat ccatcatcca tccatccatc
  catccattat ccatccatcc atccatccat catccatcca tccatccatc atccatccat
  ccatcaccca tccatcatcc atccatccat catcgatcca tccatcatct atccatcatc
  Y
  atccatccat ccatccatcc atcctccatc catcctccat ccatcatcca tccatcatcc
  atccatccat ccatcatcca tccatccatc catccatcca tccatccatc atccatccat
  ccatcatcca tccatcatcc atccatcatc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321319090	CHEV_4_130489266	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262351624					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130660662 () rs orientation: forward

Symbol	Name	Function Class
Laptm5	lysosomal-associated protein transmembrane 5	within coordinates
Tssr1315	transcription start site region 1315	1219 bp downstream
Tssr39317	transcription start site region 39317	1326 bp downstream
Tssr39318	transcription start site region 39318	1207 bp downstream
Tssr39319	transcription start site region 39319	1174 bp downstream
Tssr39320	transcription start site region 39320	1112 bp downstream
Tssr39321	transcription start site region 39321	1093 bp downstream
Tssr39322	transcription start site region 39322	1040 bp downstream
Tssr39323	transcription start site region 39323	1026 bp downstream
Tssr39324	transcription start site region 39324	995 bp downstream
Tssr39325	transcription start site region 39325	981 bp downstream
Tssr39326	transcription start site region 39326	960 bp downstream
Tssr39327	transcription start site region 39327	941 bp downstream
Tssr39328	transcription start site region 39328	915 bp downstream
Tssr39329	transcription start site region 39329	796 bp downstream
Tssr39330	transcription start site region 39330	739 bp downstream
Tssr39331	transcription start site region 39331	707 bp downstream
Tssr39332	transcription start site region 39332	1106 bp upstream
Tssr39333	transcription start site region 39333	1129 bp upstream
Tssr39334	transcription start site region 39334	1157 bp upstream
Tssr39335	transcription start site region 39335	1194 bp upstream
Tssr39336	transcription start site region 39336	1208 bp upstream
Tssr39337	transcription start site region 39337	1230 bp upstream
Tssr39338	transcription start site region 39338	1264 bp upstream
Tssr39339	transcription start site region 39339	1288 bp upstream
Tssr39340	transcription start site region 39340	1365 bp upstream
Tssr39341	transcription start site region 39341	1381 bp upstream
Tssr39342	transcription start site region 39342	1463 bp upstream
Tssr39343	transcription start site region 39343	1483 bp upstream
Tssr39344	transcription start site region 39344	1543 bp upstream
Tssr39345	transcription start site region 39345	1579 bp upstream
Tssr39346	transcription start site region 39346	1595 bp upstream
Tssr43605	transcription start site region 43605	1192 bp downstream
Tssr43606	transcription start site region 43606	1437 bp downstream
Tssr43607	transcription start site region 43607	1721 bp downstream