rs262352217 SNP Detail

Summary

• ID
  rs262352217
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:110368824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCAAGTT TGAGAGGCCC
  CTTAGTAGAT GTTTTCTAAC GGGAGTGTCC CCAAACTGCA TGTGGCTGGT GAGAAATAAG
  CAAAGTTACT GGAGTAAAGC TGACAGCAGT ATGCCCAGTA TGGTCCTGAG CAGTTGTGGG
  CTGAGCAGGG ACCTCTTTAA GAAGACATGC TTTGTACCCT AGGTACAAAG AGTCAATGCC
  R
  AGTTGCAGGC AGCCGTGGAG CCTCTGTCTG TTCCAGCTCC ATCATCACCT TCACCTCAGA
  GGAAGTGTTG ACTGCAGACT GGGGGAGTCC GCCTGTCCAG GTTGCAACTT GGAGGGACTT
  GGCTTGCTCT GAAGAGGCTG GTAGTACCTG GTCCTCTCTA GGTGGGCTGG TGTGAGACTC
  TAACCTTTCA GGCCTATCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322398781	CHEV_7_117913131	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262352217					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110368824 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ampd3	adenosine monophosphate deaminase 3			Intron
				Noncoding-Transcript-Variant
B430319F04Rik	RIKEN cDNA B430319F04 gene			272 bp upstream
Cpgi19579	CpG island 19579			384 bp distal
Rr653308	regulatory region 653308			1401 bp distal
Rr653309	regulatory region 653309			696 bp distal
Rr653310	regulatory region 653310			within coordinates
Rr653311	regulatory region 653311			1045 bp proximal
Tssr68503	transcription start site region 68503			1517 bp downstream
Tssr68504	transcription start site region 68504			1490 bp downstream
Tssr68505	transcription start site region 68505			1461 bp downstream
Tssr68506	transcription start site region 68506			1424 bp downstream
Tssr68507	transcription start site region 68507			983 bp downstream
Tssr68508	transcription start site region 68508			770 bp downstream
Tssr68509	transcription start site region 68509			1009 bp upstream
Tssr74265	transcription start site region 74265			252 bp upstream