rs262354674 SNP Detail

Summary

• ID
  rs262354674
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31148838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCCGCGC CCTGCCCCCT
  CTCCCCCTTC TCACCCCCCC CGCCTCGCAG CGCGGCGGCC CGGCGGCCAG GGCGCCCCCA
  GGTCTGGCCC GTCGCCACAC GGCGGCGGGC GTGGCGAGGG CGGCCCCAGA CAGCCGGCTG
  AGCGACTCGA GGAAGGAAGG AGGGCGGCGG GGGTGGGGCC GAGGGAACAT CCTGTCTGAG
  Y
  CGGGCACCGC AGACAGCGCC GTGCGCCAGC CGCCCAGACG GCGCGCCGGG CCAGCAGCGC
  GGGGTACGCG CGAGGGGGGC GGGGGAGCGG GAGCACGCGC GTGCGCGGCC GAGGCGCCAG
  GCGCGCGCCC CGGTCGGGGC TGGGGACGCG CGCGCAGCCT GCAGTGTGCA GCCCGCCGGG
  AGCCACAATA GGCCAGACGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss357433259	MGP_WTSI_3_30993611	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs262354674					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357433259	MGP_WTSI_3_30993611	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31148838 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13048	CpG island 13048	within coordinates
Gm65753	predicted gene, 65753	within coordinates
Gm65762	predicted gene, 65762	688 bp downstream
Rr397631	regulatory region 397631	872 bp downstream
Rr574879	regulatory region 574879	782 bp distal
Rr574880	regulatory region 574880	391 bp distal
Rr574881	regulatory region 574881	within coordinates
Rr574882	regulatory region 574882	447 bp proximal
Rr574883	regulatory region 574883	478 bp proximal
Rr574884	regulatory region 574884	1142 bp proximal
Skil	SKI-like	421 bp upstream
Tssr28706	transcription start site region 28706	782 bp downstream
Tssr28707	transcription start site region 28707	639 bp downstream
Tssr28708	transcription start site region 28708	1 bp downstream
Tssr28709	transcription start site region 28709	5 bp upstream
Tssr28710	transcription start site region 28710	30 bp upstream
Tssr28711	transcription start site region 28711	248 bp upstream
Tssr28712	transcription start site region 28712	272 bp upstream
Tssr28713	transcription start site region 28713	363 bp upstream
Tssr28714	transcription start site region 28714	1208 bp upstream
Tssr28715	transcription start site region 28715	1685 bp upstream
Tssr32911	transcription start site region 32911	1138 bp downstream