rs262355627 SNP Detail

Summary

• ID
  rs262355627
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112643203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGGACAA CCTTGGACTC
  TGCACAGGTC CATGCAGGAT GGGTTGCAGG TCAAGAGGGA TCAGGGAGGA ACTCACTAAA
  GACGTGACCT TCAAGCAAAG GCAGGAATAA AGAGGAGAGA CCGTGTCAGG GACTTTGGAA
  AGAACATCCC AGGACCACAG GCACATCGCC TTACGGTATG CCCTGAAGTT AATTTTCACA
  R
  GTCCCTAGAA TATGCTCTGA TTCCCGTGTT GCTAGTCCCC AGTAGCAGAG GTATTTATTA
  TTAAGGGGGT AGGGCAGTGG TTCTCAACCT GTGGGTCACG ACCCATTGGG GATAAAATGA
  CCCTTTCATA GAGGTCGCCT AAGATCATCA GAAAAGCAGA TGGTTCACAG GACGATTCGT
  AAAAGTGGCA AGATTAAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387390239	MGP_WTSI_12_113914980	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262355627					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387390239	MGP_WTSI_12_113914980	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112643203 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	1937 bp upstream
Cpgi5173	CpG island 5173	1860 bp distal
Cpgi5174	CpG island 5174	1334 bp proximal
Gm30150	predicted gene, 30150	799 bp downstream
Rr369631	regulatory region 369631	1230 bp downstream
Rr473556	regulatory region 473556	822 bp distal
Rr473557	regulatory region 473557	1766 bp distal
Rr473558	regulatory region 473558	1301 bp distal
Rr473559	regulatory region 473559	1110 bp distal
Rr473560	regulatory region 473560	864 bp distal
Rr473561	regulatory region 473561	1557 bp proximal
Rr473562	regulatory region 473562	1569 bp proximal
Rr473563	regulatory region 473563	1842 bp proximal
Tssr117883	transcription start site region 117883	1955 bp upstream
Tssr117884	transcription start site region 117884	1932 bp upstream