rs262356685 SNP Detail

Summary

• ID
  rs262356685
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126813844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAGAACT TGGAGGAATA
  GGAAAACCCA ATTGGAACGC GGGAAGAGCG GTGGGGGGGG GGGGGGAGGA GTGGTGGGGA
  GGCTTTTCTT GGAGTGCGGT CCTCTTAGAG CCGCGCGGAA GACGAAGTCG GATGGGCCTT
  AAACTTCCGG ATTGGAGGGA TCTGGTTTAA GTGCAAGGGC AGGCCTACCC TCTGGATCCC
  S
  GGATTGGGCG CTGGGCTGTC CAGCGCGGGG ATGGGATAGC CGATTAGCGG TGAGCAGAGG
  CGAGGACAGG CGGTATTGGG GAATATCACA GCACATCTGA TTGCTCGCCC TGAGCCTGGC
  TCTGCTGCAT CTGGGCTTGC ATCTTCTCCA GCATTTCTTG CATGCGGCGC AGCTGTGCGG
  AGCAAGATTG CAGGCAGTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373083299	MGP_WTSI_7_134358186	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262356685					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373083299	MGP_WTSI_7_134358186	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126813844 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	within coordinates
Cpgi19732	CpG island 19732	539 bp proximal
Mylpf	myosin light chain, phosphorylatable, fast skeletal muscle	385 bp downstream
Rr655746	regulatory region 655746	958 bp distal
Rr655747	regulatory region 655747	768 bp proximal
Septin1	septin 1	within coordinates
Tssr69172	transcription start site region 69172	2000 bp downstream
Tssr69173	transcription start site region 69173	1809 bp downstream
Tssr69174	transcription start site region 69174	1543 bp downstream
Tssr69175	transcription start site region 69175	1524 bp downstream
Tssr69176	transcription start site region 69176	1483 bp downstream
Tssr69177	transcription start site region 69177	1469 bp downstream
Tssr69178	transcription start site region 69178	428 bp downstream
Tssr69179	transcription start site region 69179	411 bp downstream
Tssr69180	transcription start site region 69180	105 bp downstream
Tssr74959	transcription start site region 74959	1194 bp upstream
Tssr74960	transcription start site region 74960	455 bp upstream
Tssr74961	transcription start site region 74961	74 bp downstream
Tssr74962	transcription start site region 74962	342 bp downstream
Tssr74963	transcription start site region 74963	371 bp downstream
Tssr74964	transcription start site region 74964	413 bp downstream
Tssr74965	transcription start site region 74965	657 bp downstream
Tssr74966	transcription start site region 74966	707 bp downstream
Tssr74967	transcription start site region 74967	1011 bp downstream