rs262358553 SNP Detail

Summary

• ID
  rs262358553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:90946171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCACGGT GCTTCCTTGG
  GAGTCTGGCG CTGGCACCTT TTTGTATATT GAATGCTTTT TAAAAAGCTC TTCCTCCCCA
  CCCCCTCATT AGTCACTAAA GACAAGTAAA ATTATTGACA GCTATTCTCC CAGAGAAGTG
  TCTCATTCAA GAGTTTGCGT GTGCCGGGTC CAGGGGGCGT CCCGTGTGCA CGATCTCTTA
  Y
  TTGTCTAGAG AGCATGTTTC CAAAGCTGGG CCCTAGGGAC ACGGGGACCA TGGACACACA
  GCGCTTGTTT CTAGTGAGAT AAGTCTTGGC TTGTTATCAG GGCTCAGGGA TCATACTGAA
  AAGTCCTTAG CAATCTTCTG AGTGAGACAC CATCCAAGAG TGGTGGTGGT GGTGGCCGCA
  GCAATAAGCA CAGGTGTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354807921	MGP_WTSI_2_90955983	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262358553					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354807921	MGP_WTSI_2_90955983	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90946171 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11896	CpG island 11896	196 bp distal
Rr560650	regulatory region 560650	1655 bp distal
Rr560651	regulatory region 560651	616 bp distal
Rr560652	regulatory region 560652	553 bp distal
Rr560653	regulatory region 560653	1828 bp proximal
Spi1	Spi-1 proto-oncogene	67 bp downstream
Tssr18851	transcription start site region 18851	1543 bp downstream
Tssr18852	transcription start site region 18852	1483 bp downstream
Tssr18853	transcription start site region 18853	655 bp downstream
Tssr18854	transcription start site region 18854	613 bp downstream
Tssr18855	transcription start site region 18855	436 bp downstream
Tssr18856	transcription start site region 18856	388 bp downstream
Tssr18857	transcription start site region 18857	272 bp downstream
Tssr18858	transcription start site region 18858	229 bp downstream
Tssr18859	transcription start site region 18859	124 bp downstream
Tssr25158	transcription start site region 25158	69 bp upstream